Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0365 ATGGTGTTAATTGTGGCTTCGTCCTCCGTTGATTCGGGAATTGGTTGCTGGGACCTTCACACGGGTGCGGAACAGCTCCGTTACAAGTCGTGCACTTCTCCTTCGCACGGTCTCGTGTGCGTTGGCGAAAGGTTTCTCGCTTGTTCTCAGCTTCGCGTTCCCAAAGCCAATGCTGGCTCCGTTCTCTACTGGTCTTGGTTTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAACCAGTTATGGGCTTGGCTTCCAACAATGAGGGTACCTATATTGTTGGTGGTGGTTTCTCTGGAGATATTTACTTGTGGGAGGTATCGAGCGGTAGGTTGCTTAAGAAATGGCATGCCCATTATAGGGCAGTTACTTGCTTGGTATTCTCTGAAGATGACTCCCTGCTAATTTCCGGCTCTGAAGATGGATGCGTTAGAGTTTGGTCCCTTTTAACGGTATTTGATGATGGATGGGAAAGGGAAAGGAAACATTTATATGAACATAGTTTCACTGGGCATGATCTACCTGTTACTGATATTGTTGTTGGCTATGGAGGATCTAATGCTATCATAATCTCTTCCTCTGTGGATAAAACTTGCAAGGTGTGGAGCTTATCTAAGGGGAATTTATTAAGAAATATAGTCTTTCCTTCAATAATTGATGCAATGGCTTTGGATCCTGGTGAACATGTCTTCTATGGGGGTGGTAGAGATGGGAATATATACACTGTTGCACTTAATGCTAAAAGCCCAGCCAGCAGTGATTACGGATTGCATATTATCAGCTCGTTAGCAAATCAGAGCAAGTCTGTTACATCGTTGGCATACTGCTCAAGTGGAAATTTGTTGATCTCTGGATCAGAGGATGGATTCATCAGAATTTGGGATACCAGAACCAATAATGTTATTCGCGTTCTCGCGCATTCAAAAGGTCCTGTAAATAATATACTTATTGTAAGACAACAACAACTCCCAAAGTCGCAGCTTAATTCAACTTCTCAAGGCACTTTGAGAAAGCATCGGTCGCTATTACCTCCCGCCCTCGCAAAATTCAGAAACTCGAAGGACGACGATGAAGACACTGGTGTTATAATTGGTCTATCAGGAGGTCCTCCCTCCGATTCTATGGGGTTTTCTCCTCTTACTTCTCACGTGATGAACAATCAAATCGCAGAACTTCAGCAACAAGGTTCTGCTGCTACAGGAATGGAGTTGGAAAAACTGAAGCGTGATTGTGCAAAATCCAAGCAAATGATACAAAATTGGACCAAAATGTATGACAATTTACATCAATTTTGTGTTAATGAGCTTCTTGATGCTGATCAAACCAATCATTTGTAA 1338 43.05 MVLIVASSSVDSGIGCWDLHTGAEQLRYKSCTSPSHGLVCVGERFLACSQLRVPKANAGSVLYWSWFKPQVEVKSFPAEPVMGLASNNEGTYIVGGGFSGDIYLWEVSSGRLLKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWERERKHLYEHSFTGHDLPVTDIVVGYGGSNAIIISSSVDKTCKVWSLSKGNLLRNIVFPSIIDAMALDPGEHVFYGGGRDGNIYTVALNAKSPASSDYGLHIISSLANQSKSVTSLAYCSSGNLLISGSEDGFIRIWDTRTNNVIRVLAHSKGPVNNILIVRQQQLPKSQLNSTSQGTLRKHRSLLPPALAKFRNSKDDDEDTGVIIGLSGGPPSDSMGFSPLTSHVMNNQIAELQQQGSAATGMELEKLKRDCAKSKQMIQNWTKMYDNLHQFCVNELLDADQTNHL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3323434 3329418 + Sed0026906.2 Sed09g0365 725129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0365 445 SMART WD40_4 109 148 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 SMART WD40_4 69 106 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 SMART WD40_4 206 244 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 SMART WD40_4 162 203 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 SMART WD40_4 256 295 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 Coils Coil 404 424 - -
Sed09g0365 445 Gene3D - 215 323 IPR015943 GO:0005515(InterPro)
Sed09g0365 445 PANTHER WD-REPEAT PROTEIN 18 3 441 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Sed09g0365 445 SUPERFAMILY WD40 repeat-like 5 317 IPR036322 GO:0005515(InterPro)
Sed09g0365 445 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 Pfam WD domain, G-beta repeat 262 295 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Sed09g0365 445 Gene3D - 2 214 IPR015943 GO:0005515(InterPro)
Sed09g0365 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Sed09g0365 445 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Sed09g0365 445 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Sed09g0365 445 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Sed09g0365 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515(InterPro)
Sed09g0365 445 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Sed09g0365 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0365 K14829 - - csv:101204364 771.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0364 Sed-Chr9:3323434 Sed09g0365 Sed-Chr9:3323434 6.20E-264 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g753 Blo01g01526 . Bda01g00570 . Bpe02g00431 . . Bma01g02270 . . . . . . . Cpe06g00165 . . . . . . . . . . . . . . . . . . . Lsi04g01549 Csa04g02420 . . . . . . . . . . Sed09g0365 . Cmo09g00230 . . . . . Cpe02g00186 Bhi09g03308 Tan01g4765 Cmetu07g1918 . Hepe01g1773 Mch11g0299 . Cla05g02050 Cam05g2202 Cec05g2219 . Clacu05g2194 Cmu05g2060 . . . Chy07g00141 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003200 1 2 2 1 1 1 1 1 1 1 1 1 2 1 2 3 1 2 2 1 1 1 2 1 2 1 3 2 8 1 50