Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0380 | ATGTATTTGAGACTTGGAGGCATTGGTAATATAGGTGAAGGATCTATGGATGACATGCAAGGAACTGGAGTAACTTTGGCCGAGTCGTCGTCTTCGAGACTAATGAAGAGGTCACGTATCCCTGGAAGCGGAGCCCATGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCGGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGCGAGCTTCATTCTAAAACGCCGAAAGTAACCATTCGCGGTCAGGAGCAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGGGACTATGGCACTAAACGAAGGAAGATTTCACTATGGAAATCAAGGTTCGAGATACTTACCATTCAGCAATCAGTTACTGTCTGCCAGAAATGATGCGAGCTCTTCTTGGCTCGGAACGATCAAACCCGAGAACAACGCCGCTCTTTTTGGCAGCAACTCGCAGTTCAACATTGCTGACAGAAGAAGTATGTTGCAAGGGTCATTGGCTTGTGATTACAAAGAAAAACAAATAGAAAACTCTTGCATCCCTATAGGATTGATTCCCAAACCAGAGCCATTTCTCAACATTGGATCCAGCAACGACGGGGATGCTCCGAAAGTGCTCGGCAACGGATCGAATCGGTTCTTCCAGTCTCACTGTGCTCTCTCTCTTCTGTCAACACCAGGTGAGCCTGTGGAGATCAATAATCTAAGCTCCATGGTCCAATCCAACCTCGGCCCGCCAGCGCATTACATCCATAGCAACGGCCTTGGCTTGGAGATCAGTGACCCCGTTAATTCTGGTTTTGTCTCGGACCGTAGTAGCGATGCCAACATCCGATGCTACTCGACATTCCATGACGGACCGGGCGGATCATCCATAGATTTGTTCAGGTTTTGA | 981 | 48.32 | MYLRLGGIGNIGEGSMDDMQGTGVTLAESSSSRLMKRSRIPGSGAHVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTIRGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPGTMALNEGRFHYGNQGSRYLPFSNQLLSARNDASSSWLGTIKPENNAALFGSNSQFNIADRRSMLQGSLACDYKEKQIENSCIPIGLIPKPEPFLNIGSSNDGDAPKVLGNGSNRFFQSHCALSLLSTPGEPVEINNLSSMVQSNLGPPAHYIHSNGLGLEISDPVNSGFVSDRSSDANIRCYSTFHDGPGGSSIDLFRF | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3429148 | 3432260 | + | Sed0027814.1 | Sed09g0380 | 725144 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0380 | 326 | SUPERFAMILY | SBT domain | 48 | 129 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed09g0380 | 326 | FunFam | Squamosa promoter-binding-like protein 14 | 42 | 111 | - | - | |
Sed09g0380 | 326 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 28 | 165 | IPR044817 | GO:0003677(InterPro) | |
Sed09g0380 | 326 | Gene3D | - | 41 | 111 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed09g0380 | 326 | ProSiteProfiles | Zinc finger SBP-type profile. | 47 | 124 | IPR004333 | GO:0003677(InterPro) | |
Sed09g0380 | 326 | Pfam | SBP domain | 50 | 123 | IPR004333 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0288 | Sed-Chr4:2146044 | Sed09g0380 | Sed-Chr9:3429148 | 2.40E-29 | dispersed | |
Sed04g0289 | Sed-Chr4:2146044 | Sed09g0380 | Sed-Chr9:3429148 | 3.70E-29 | dispersed | |
Sed06g0438 | Sed-Chr6:3860872 | Sed09g0380 | Sed-Chr9:3429148 | 3.90E-40 | dispersed | |
Sed07g0094 | Sed-Chr7:945144 | Sed09g0380 | Sed-Chr9:3429148 | 8.80E-85 | dispersed | |
Sed07g0095 | Sed-Chr7:945144 | Sed09g0380 | Sed-Chr9:3429148 | 8.80E-85 | dispersed | |
Sed08g1495 | Sed-Chr8:29441337 | Sed09g0380 | Sed-Chr9:3429148 | 7.40E-38 | dispersed | |
Sed09g0380 | Sed-Chr9:3429148 | Sed12g2519 | Sed-Chr12:34626484 | 5.90E-46 | dispersed | |
Sed09g0380 | Sed-Chr9:3429148 | Sed09g0381 | Sed-Chr9:3429148 | 1.20E-192 | tandem | |
Sed07g0093 | Sed-Chr7:945144 | Sed09g0380 | Sed-Chr9:3429148 | 1.10E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39518 | PF03110 | SBP | 1.10E-29 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0380 | - | - | - | 0.0 |