Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0380 ATGTATTTGAGACTTGGAGGCATTGGTAATATAGGTGAAGGATCTATGGATGACATGCAAGGAACTGGAGTAACTTTGGCCGAGTCGTCGTCTTCGAGACTAATGAAGAGGTCACGTATCCCTGGAAGCGGAGCCCATGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCGGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGCGAGCTTCATTCTAAAACGCCGAAAGTAACCATTCGCGGTCAGGAGCAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGGGACTATGGCACTAAACGAAGGAAGATTTCACTATGGAAATCAAGGTTCGAGATACTTACCATTCAGCAATCAGTTACTGTCTGCCAGAAATGATGCGAGCTCTTCTTGGCTCGGAACGATCAAACCCGAGAACAACGCCGCTCTTTTTGGCAGCAACTCGCAGTTCAACATTGCTGACAGAAGAAGTATGTTGCAAGGGTCATTGGCTTGTGATTACAAAGAAAAACAAATAGAAAACTCTTGCATCCCTATAGGATTGATTCCCAAACCAGAGCCATTTCTCAACATTGGATCCAGCAACGACGGGGATGCTCCGAAAGTGCTCGGCAACGGATCGAATCGGTTCTTCCAGTCTCACTGTGCTCTCTCTCTTCTGTCAACACCAGGTGAGCCTGTGGAGATCAATAATCTAAGCTCCATGGTCCAATCCAACCTCGGCCCGCCAGCGCATTACATCCATAGCAACGGCCTTGGCTTGGAGATCAGTGACCCCGTTAATTCTGGTTTTGTCTCGGACCGTAGTAGCGATGCCAACATCCGATGCTACTCGACATTCCATGACGGACCGGGCGGATCATCCATAGATTTGTTCAGGTTTTGA 981 48.32 MYLRLGGIGNIGEGSMDDMQGTGVTLAESSSSRLMKRSRIPGSGAHVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTIRGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPGTMALNEGRFHYGNQGSRYLPFSNQLLSARNDASSSWLGTIKPENNAALFGSNSQFNIADRRSMLQGSLACDYKEKQIENSCIPIGLIPKPEPFLNIGSSNDGDAPKVLGNGSNRFFQSHCALSLLSTPGEPVEINNLSSMVQSNLGPPAHYIHSNGLGLEISDPVNSGFVSDRSSDANIRCYSTFHDGPGGSSIDLFRF 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3429148 3432260 + Sed0027814.1 Sed09g0380 725144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0380 326 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed09g0380 326 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
Sed09g0380 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 165 IPR044817 GO:0003677(InterPro)
Sed09g0380 326 Gene3D - 41 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed09g0380 326 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Sed09g0380 326 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0380 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0288 Sed-Chr4:2146044 Sed09g0380 Sed-Chr9:3429148 2.40E-29 dispersed
Sed04g0289 Sed-Chr4:2146044 Sed09g0380 Sed-Chr9:3429148 3.70E-29 dispersed
Sed06g0438 Sed-Chr6:3860872 Sed09g0380 Sed-Chr9:3429148 3.90E-40 dispersed
Sed07g0094 Sed-Chr7:945144 Sed09g0380 Sed-Chr9:3429148 8.80E-85 dispersed
Sed07g0095 Sed-Chr7:945144 Sed09g0380 Sed-Chr9:3429148 8.80E-85 dispersed
Sed08g1495 Sed-Chr8:29441337 Sed09g0380 Sed-Chr9:3429148 7.40E-38 dispersed
Sed09g0380 Sed-Chr9:3429148 Sed12g2519 Sed-Chr12:34626484 5.90E-46 dispersed
Sed09g0380 Sed-Chr9:3429148 Sed09g0381 Sed-Chr9:3429148 1.20E-192 tandem
Sed07g0093 Sed-Chr7:945144 Sed09g0380 Sed-Chr9:3429148 1.10E-124 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39518 PF03110 SBP 1.10E-29 No_clan Sed TF