Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0380 ATGTATTTGAGACTTGGAGGCATTGGTAATATAGGTGAAGGATCTATGGATGACATGCAAGGAACTGGAGTAACTTTGGCCGAGTCGTCGTCTTCGAGACTAATGAAGAGGTCACGTATCCCTGGAAGCGGAGCCCATGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCGGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGCGAGCTTCATTCTAAAACGCCGAAAGTAACCATTCGCGGTCAGGAGCAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGGGACTATGGCACTAAACGAAGGAAGATTTCACTATGGAAATCAAGGTTCGAGATACTTACCATTCAGCAATCAGTTACTGTCTGCCAGAAATGATGCGAGCTCTTCTTGGCTCGGAACGATCAAACCCGAGAACAACGCCGCTCTTTTTGGCAGCAACTCGCAGTTCAACATTGCTGACAGAAGAAGTATGTTGCAAGGGTCATTGGCTTGTGATTACAAAGAAAAACAAATAGAAAACTCTTGCATCCCTATAGGATTGATTCCCAAACCAGAGCCATTTCTCAACATTGGATCCAGCAACGACGGGGATGCTCCGAAAGTGCTCGGCAACGGATCGAATCGGTTCTTCCAGTCTCACTGTGCTCTCTCTCTTCTGTCAACACCAGGTGAGCCTGTGGAGATCAATAATCTAAGCTCCATGGTCCAATCCAACCTCGGCCCGCCAGCGCATTACATCCATAGCAACGGCCTTGGCTTGGAGATCAGTGACCCCGTTAATTCTGGTTTTGTCTCGGACCGTAGTAGCGATGCCAACATCCGATGCTACTCGACATTCCATGACGGACCGGGCGGATCATCCATAGATTTGTTCAGGTTTTGA 981 48.32 MYLRLGGIGNIGEGSMDDMQGTGVTLAESSSSRLMKRSRIPGSGAHVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTIRGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPGTMALNEGRFHYGNQGSRYLPFSNQLLSARNDASSSWLGTIKPENNAALFGSNSQFNIADRRSMLQGSLACDYKEKQIENSCIPIGLIPKPEPFLNIGSSNDGDAPKVLGNGSNRFFQSHCALSLLSTPGEPVEINNLSSMVQSNLGPPAHYIHSNGLGLEISDPVNSGFVSDRSSDANIRCYSTFHDGPGGSSIDLFRF 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3429148 3432260 + Sed0027814.1 Sed09g0380 725144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0380 326 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed09g0380 326 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
Sed09g0380 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 165 IPR044817 GO:0003677(InterPro)
Sed09g0380 326 Gene3D - 41 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed09g0380 326 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Sed09g0380 326 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0288 Sed-Chr4:2146044 Sed09g0380 Sed-Chr9:3429148 2.40E-29 dispersed
Sed04g0289 Sed-Chr4:2146044 Sed09g0380 Sed-Chr9:3429148 3.70E-29 dispersed
Sed06g0438 Sed-Chr6:3860872 Sed09g0380 Sed-Chr9:3429148 3.90E-40 dispersed
Sed07g0094 Sed-Chr7:945144 Sed09g0380 Sed-Chr9:3429148 8.80E-85 dispersed
Sed07g0095 Sed-Chr7:945144 Sed09g0380 Sed-Chr9:3429148 8.80E-85 dispersed
Sed08g1495 Sed-Chr8:29441337 Sed09g0380 Sed-Chr9:3429148 7.40E-38 dispersed
Sed09g0380 Sed-Chr9:3429148 Sed12g2519 Sed-Chr12:34626484 5.90E-46 dispersed
Sed09g0380 Sed-Chr9:3429148 Sed09g0381 Sed-Chr9:3429148 1.20E-192 tandem
Sed07g0093 Sed-Chr7:945144 Sed09g0380 Sed-Chr9:3429148 1.10E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39518 PF03110 SBP 1.10E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0380 - - - 0.0