Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0382 | ATGGGAAGAGGAAGAGTAGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTCGCCAAACGAAGAAACGGTCTTCTCAAGAAAGCTTACGAGCTCTCGATTTTATGCGATGCCGAGGTTGCTCTCATTATCTTCTCCAACCGCGGTAAACTCTACGAGTTTTGCAGCAGCTCGAGCATGCTCCAAACACTAGAGAGATACCAAAAATGCAACTATGGAGCACCAGAGCCAAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCACTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGCAGCAAAGAACTTGAATCTCTTGAAAGACAACTTGATATGTCACTCAAACAGATTAGATCAACAAGGACTCAATCCATGATAGATCAGCTAACTGAGCTTCAACGTAAGGAGCATGTTCTTAATGAAGCAAACAAGAATCTGAAACAAAGGTTATTAGAAGGGTATCAAGTAAATGCACTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACATCAAGGCCAGCCCTCAAGTGATGCCTTCTTTCATCCTTTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCAAGATCCCATAACAGTGGTCAATAATGCAGGGCCAAGCATGACTAATTTCCTCCCAGGATGGTTCCCTTGA | 732 | 43.58 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSSSSMLQTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQSMIDQLTELQRKEHVLNEANKNLKQRLLEGYQVNALQLNQSADDMMYGRHQGQPSSDAFFHPLDCEPTLQIGYQQDPITVVNNAGPSMTNFLPGWFP | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3457690 | 3467778 | + | Sed0023127.1 | Sed09g0382 | 725146 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0382 | 243 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 194 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed09g0382 | 243 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | Coils | Coil | 126 | 146 | - | - | |
Sed09g0382 | 243 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | Gene3D | - | 13 | 98 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | Pfam | K-box region | 91 | 173 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed09g0382 | 243 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed09g0382 | 243 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0382 | 243 | ProSiteProfiles | K-box domain profile. | 89 | 185 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed09g0382 | 243 | Coils | Coil | 152 | 172 | - | - | |
Sed09g0382 | 243 | FunFam | MADS-box transcription factor 7 | 13 | 98 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2188 | Sed-Chr4:35885375 | Sed09g0382 | Sed-Chr9:3457690 | 5.20E-55 | dispersed | |
Sed09g0101 | Sed-Chr9:753468 | Sed09g0382 | Sed-Chr9:3457690 | 8.10E-56 | dispersed | |
Sed09g0382 | Sed-Chr9:3457690 | Sed13g0187 | Sed-Chr13:1215684 | 4.40E-38 | dispersed | |
Sed09g0382 | Sed-Chr9:3457690 | Sed09g0390 | Sed-Chr9:3635811 | 6.60E-18 | proximal | |
Sed07g0090 | Sed-Chr7:917278 | Sed09g0382 | Sed-Chr9:3457690 | 1.50E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39520 | PF01486 | K-box | 1.30E-25 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0382 | - | - | - | 0.0 |