Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0382 ATGGGAAGAGGAAGAGTAGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTCGCCAAACGAAGAAACGGTCTTCTCAAGAAAGCTTACGAGCTCTCGATTTTATGCGATGCCGAGGTTGCTCTCATTATCTTCTCCAACCGCGGTAAACTCTACGAGTTTTGCAGCAGCTCGAGCATGCTCCAAACACTAGAGAGATACCAAAAATGCAACTATGGAGCACCAGAGCCAAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCACTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGCAGCAAAGAACTTGAATCTCTTGAAAGACAACTTGATATGTCACTCAAACAGATTAGATCAACAAGGACTCAATCCATGATAGATCAGCTAACTGAGCTTCAACGTAAGGAGCATGTTCTTAATGAAGCAAACAAGAATCTGAAACAAAGGTTATTAGAAGGGTATCAAGTAAATGCACTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACATCAAGGCCAGCCCTCAAGTGATGCCTTCTTTCATCCTTTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCAAGATCCCATAACAGTGGTCAATAATGCAGGGCCAAGCATGACTAATTTCCTCCCAGGATGGTTCCCTTGA 732 43.58 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSSSSMLQTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQSMIDQLTELQRKEHVLNEANKNLKQRLLEGYQVNALQLNQSADDMMYGRHQGQPSSDAFFHPLDCEPTLQIGYQQDPITVVNNAGPSMTNFLPGWFP 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3457690 3467778 + Sed0023127.1 Sed09g0382 725146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0382 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed09g0382 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 Coils Coil 126 146 - -
Sed09g0382 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 Gene3D - 13 98 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed09g0382 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed09g0382 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0382 243 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed09g0382 243 Coils Coil 152 172 - -
Sed09g0382 243 FunFam MADS-box transcription factor 7 13 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2188 Sed-Chr4:35885375 Sed09g0382 Sed-Chr9:3457690 5.20E-55 dispersed
Sed09g0101 Sed-Chr9:753468 Sed09g0382 Sed-Chr9:3457690 8.10E-56 dispersed
Sed09g0382 Sed-Chr9:3457690 Sed13g0187 Sed-Chr13:1215684 4.40E-38 dispersed
Sed09g0382 Sed-Chr9:3457690 Sed09g0390 Sed-Chr9:3635811 6.60E-18 proximal
Sed07g0090 Sed-Chr7:917278 Sed09g0382 Sed-Chr9:3457690 1.50E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39520 PF01486 K-box 1.30E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0382 - - - 0.0