Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0384 ATGAAGTCCTACTTTGCTAATTCTTCTTCTTCTTCTTCTTCTTCAGTTATTACTTCCACTAACAGCTTTGTTCCTCCCAATGCCCCTCTGCTCTATGGATCTTTTCAGATATGGCATCAATTGTGGGGGAAGGTTATTGGGAACATTTGCAAGATACAAAACCATTACTACCAGTATGTTGGAACCAAGAACACCACAAAATCTTGGTGGAGAAGGCTTTTGGTGGGGTGGGTTGTAAGCTCCATTTTTGGCTCTCTATGGAACTTCCATTACATGAGCTTACAAGCTACAATGAAGAGGAAGGATTCATTGGGAAGCATGTGTGATGAGAGGGCTAGGATGCTTCAAGACCAGTTCAATGTGAACATGAATCATATCCAAGCATTGTCCATCCTCATCTCCACATTCCATCATGGCATGAAACCATCTTCTATTGATCAGCTGACATTTGCGAGGTACACGGGAAGAACTGCTTTTGAGAGGCCTCTTACTGGTGGTGTGGCATATGCGGTGAGGGTGCTCCATTCTGAAAGAGAACTTTTCGAGAAACAGCAGGGCTGGAAAATTAGAAGAATGGACCAAATCGAAAATAGTCCGGTTCACGAAGATGACTATGCTGCAGAAGAGCTGGAGCCATCACCCATCAAAGACGAATATGCTCCCGTAATCTTTGCACAGGATACAATTTCTCATGTTATTTCCCTCGATATGCTGTCGGGAAAGGAAGACAGTAATAATGTGTTACGCGCTAGAGAATCCGGAAAGGGAGTGTTAACTGCTCCATTCAGATTAATCAAAACGAATCGTCTGGGCGTCATACTTACATTCGCTGTCTACAAGAGAGAACTTCCCTCAAATGCCTCTCCAATTGAGAGGATTGAAGCTACAGATGGGTATCTTGGCGGAGTTTTCGATATCGAGTCGCTTGTGGAGAAGTTACTGCAACAACTTTCAAGCAACCAATCCATTATAGTGAATGTTTTTGATATGACTAACCAATCAGACCCGATCAGTATGTATGGTAACGGTGAATCAGAAGATGAGTTGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCTTATAGGAAGCATGAGATGCGATGCAGATTCAAACAAAAACAACCTTTGCCATGGTTGGCAATGACAACTTCAATTGGCATGCTCATTATTGGATTGCTTTTGGCATATATATTCCATGCAACCTTGAACCGCATTTCCAAAGTGGAGGATGATTATCATGAGATGATGGAACTCAAGAAACGTGCCGAAGCTGCCGATGTTGCCAAATCCCAGTTCCTTGCAACTGTGTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACAAACTTAGATGTCACTCAAGAAGATTATGTTAAAACTGCACAAGATAGTGGAAAAGCTTTGGTGTCACTAATAAATGAGGTTTTGGATCAGGCGAAAATCGAATCTGGAAGGCTTGAGCTCGAAGCCATACCATTCAATGTGCGAGGGATACTGGATGATATTTTGTCGCTCTTTTCTGGGAAATCTCAAGAAAAAGGACTGGAGATGGCAGTTCACATTTCAGATAGTGTTCCCGAGATCCTTGTTGGTGATCCGGGAAGGTTCAGGCAAATCATCACTAATCTCGTGGGAAACTCGATCAAGTTCACTGAGAAAGGACACATATTTGTGATGGTCAACCTTGTCGAGGAGGCTGTCGAGGAGGTTTTCGAGGAGGCTGTCGAGGAGGTTATTGAATCGACTGATCTTGAGACTGAGTCTTCAACTAATAGCACCTTGAGTGGCTATCCTGTTGCCAATAGACGACTCAGCTGGGAAGAATTCGGAACGTTCAATCAAGACGAACCAACTGCTTGTCATATCCCGCCATCTTCACCCGACCATATTATCCTCATCATATCCGTGGAAGATACGGGCATTGGTATTCCTCTAGAAGCCCAATCATGTATTTTCACTCCCTTCATGCAGGTTCAACCATCCACCTCTAGAACTCATGGCGGAACGGGTATCGGGTTGAGCATTAGCAAATGTTTGGTTGGCCTTATGAAGGGGGAAATTGGTTTTTCGAGTGTACCTAAGATTGGCTCTACCTTCTCATTTACTGCTGTTTTCTCTAAAGAGCCATGTGAGGATAACAAAACTCAACAAATTAACAACACTCCTGTTCCAGCATCCTTGGAATTCAAGGGTATGAGGGCACTAGTTGTGGACCGTCGACCGATTCGAGCCGAAGTATCAAAATATCATATTCGACGCCTTGGAATAGCTGTTGAATTAGTATCTGACTTGAACCAATGCCTGTCAACTACGAGTATTAATGGTTTAGCTATCAATATGATATTTTTTGAGCAAGATCTTTGGGATGAGGATATGAGCACATCAGATAACTTTATCAAGAACTTGAAAAGTTCTTATGGGGTTCCTCCCAAACTATTTCTCCTTACCAGCTCCACTAGTTCTTCAAAAGCTAGGAATATAATTTCTGATGTACTCACTCCCACTGTCATCTTAAAGCCCTTGAGGATAGGCATGCTCTCCGCCTCTCTGTGCCGTGCCATGGGCGTAGCGGTTGAGGGTAATCCTTGCGATGAAGAGCTTCCTGTACTCACTCTCTGTAATTTACTTCTTGATCGAAAAATTCTTGTAATAGATGACAATAAGGTTAACCTTATCGTTGCTGCTGGTGCTCTAAAGCGGTATGGCGCCGATGTGGTATGTGAAAACAATGGAAGCGATGCAATCCGACTGCTTACGCCACCCCATCCTTTTGATGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGCTTTCAAGCTACAAGAAGAATTCGAGAAATTGAGCATCGTATCAATGACGATATCAAAGATGGAGAGCTGTCAAAAGAAGCATACAAAAACAAATGTAATTGGCGCGTGCCCATCTTGGCCATGACTGCGGACGTAATCCAGGCTACACATGAGGAATGCCTTAGATGCGGGATGGATGGATATGTTTCAAAGCCATTCGATGTTGAACGACTGTACCGAGAAGTCTCTCGATTCTTCCCAGCACCTCAAAGGAAACTCCATAGAGAGATCACATATTCTGAGGCTGCAGATGACATTGGCCTATTCAGTCAGGATGAACAGCATGCATGA 3171 43.49 MKSYFANSSSSSSSSVITSTNSFVPPNAPLLYGSFQIWHQLWGKVIGNICKIQNHYYQYVGTKNTTKSWWRRLLVGWVVSSIFGSLWNFHYMSLQATMKRKDSLGSMCDERARMLQDQFNVNMNHIQALSILISTFHHGMKPSSIDQLTFARYTGRTAFERPLTGGVAYAVRVLHSERELFEKQQGWKIRRMDQIENSPVHEDDYAAEELEPSPIKDEYAPVIFAQDTISHVISLDMLSGKEDSNNVLRARESGKGVLTAPFRLIKTNRLGVILTFAVYKRELPSNASPIERIEATDGYLGGVFDIESLVEKLLQQLSSNQSIIVNVFDMTNQSDPISMYGNGESEDELQHVSPLNFGDPYRKHEMRCRFKQKQPLPWLAMTTSIGMLIIGLLLAYIFHATLNRISKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTNLDVTQEDYVKTAQDSGKALVSLINEVLDQAKIESGRLELEAIPFNVRGILDDILSLFSGKSQEKGLEMAVHISDSVPEILVGDPGRFRQIITNLVGNSIKFTEKGHIFVMVNLVEEAVEEVFEEAVEEVIESTDLETESSTNSTLSGYPVANRRLSWEEFGTFNQDEPTACHIPPSSPDHIILIISVEDTGIGIPLEAQSCIFTPFMQVQPSTSRTHGGTGIGLSISKCLVGLMKGEIGFSSVPKIGSTFSFTAVFSKEPCEDNKTQQINNTPVPASLEFKGMRALVVDRRPIRAEVSKYHIRRLGIAVELVSDLNQCLSTTSINGLAINMIFFEQDLWDEDMSTSDNFIKNLKSSYGVPPKLFLLTSSTSSSKARNIISDVLTPTVILKPLRIGMLSASLCRAMGVAVEGNPCDEELPVLTLCNLLLDRKILVIDDNKVNLIVAAGALKRYGADVVCENNGSDAIRLLTPPHPFDACFMDIQMPEMDGFQATRRIREIEHRINDDIKDGELSKEAYKNKCNWRVPILAMTADVIQATHEECLRCGMDGYVSKPFDVERLYREVSRFFPAPQRKLHREITYSEAADDIGLFSQDEQHA 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3495459 3504037 + Sed0025777.2 Sed09g0384 725148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0384 1056 Pfam Response regulator receiver domain 890 959 IPR001789 GO:0000160(InterPro)
Sed09g0384 1056 Gene3D - 397 491 - -
Sed09g0384 1056 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 482 711 IPR036890 -
Sed09g0384 1056 SUPERFAMILY CheY-like 887 1025 IPR011006 -
Sed09g0384 1056 SMART HKATPase_4 540 716 IPR003594 -
Sed09g0384 1056 FunFam Histidine kinase 4 400 491 - -
Sed09g0384 1056 Gene3D - 887 1054 - -
Sed09g0384 1056 ProSiteProfiles CHASE domain profile. 141 367 IPR006189 -
Sed09g0384 1056 SMART HisKA_10 428 493 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed09g0384 1056 CDD HATPase_EvgS-ArcB-TorS-like 545 714 - -
Sed09g0384 1056 Pfam CHASE domain 144 340 IPR006189 -
Sed09g0384 1056 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 641 711 IPR003594 -
Sed09g0384 1056 ProSiteProfiles Histidine kinase domain profile. 435 716 IPR005467 -
Sed09g0384 1056 CDD REC_hyHK_CKI1_RcsC-like 890 1022 - -
Sed09g0384 1056 FunFam Histidine kinase 4 145 374 - -
Sed09g0384 1056 SUPERFAMILY CheY-like 737 863 IPR011006 -
Sed09g0384 1056 CDD HisKA 428 489 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed09g0384 1056 Coils Coil 405 425 - -
Sed09g0384 1056 ProSiteProfiles Response regulatory domain profile. 742 863 IPR001789 GO:0000160(InterPro)
Sed09g0384 1056 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 1025 IPR050956 -
Sed09g0384 1056 SMART CHASE_2 141 342 IPR006189 -
Sed09g0384 1056 Gene3D - 92 144 - -
Sed09g0384 1056 SMART REC_2 888 1022 IPR001789 GO:0000160(InterPro)
Sed09g0384 1056 PRINTS Bacterial sensor protein C-terminal signature 641 655 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed09g0384 1056 PRINTS Bacterial sensor protein C-terminal signature 676 694 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed09g0384 1056 PRINTS Bacterial sensor protein C-terminal signature 659 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed09g0384 1056 ProSiteProfiles Response regulatory domain profile. 889 1026 IPR001789 GO:0000160(InterPro)
Sed09g0384 1056 Pfam His Kinase A (phospho-acceptor) domain 428 493 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed09g0384 1056 Gene3D - 492 717 IPR036890 -
Sed09g0384 1056 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 413 494 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed09g0384 1056 Gene3D CHASE domain 145 374 IPR042240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0384 Sed-Chr9:3495459 Sed13g1937 Sed-Chr13:24280361 1.40E-48 dispersed
Sed09g0383 Sed-Chr9:3495459 Sed09g0384 Sed-Chr9:3495459 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39522 PF03924 CHASE 1.80E-34 CL0165 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0384 K14489 - csv:101216313 1560.81