Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0385 | ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGGCTCCAGAGGTGTATTTTATTTTACAGAATCATGAAAATTATCAGCTGACGGAGGAGGCCCCAAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTTCGTTTCTTTCGTAAAGATGGTCATAGTTGGCGAAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAGCTTCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTTGACCACATTGTTCTTGTACACTACAGAGATATTAATGAGGGAAGGTCTGGGACGGAAAACGTTCCACAGTTATCTTCAGCATCGCCTTCTACCTTTGGTTCCGGTTCATCTCAAAATCTTGCTTCGGAAAGTCAACAAAATTCATTGAGCCCAGGGTCTGTAGAAGTTTCTGACACTGACCACTGTACTATTGAGTCAAATGGAGTGGATGGGCAGTGTGAAATATCAGAATTAAAAAGTTCAAACCAATGTGAGGTTTCTCAAGCTTTGAGAAGGTTAGAGGAGCAATTAAGTCTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGCAGGTTCAAATTCTAATCTTGTCGACTACCATGAGATGCTCAATGAGGATCAGTTTTCAGTGCTTCAGCCAGGAGCAGACCCAGATGCTAATGAAAAACATCACCATTACGCTATGGCACACGAGTTTATGTTTGGTAGTGAAGGAACTCAATCATGGGGTGATGCACTTTTTTCAAGTAAGACAACAGATCTTGAGTCTCAAGATAGACATTCACTCCTATGGAATGAAAATCAGGAAAAGCTATCATCATCTTCAAGTAAAAGTACACCTGTAGACAATGAATATTGCAACTGGGTGCACAGCAGAGAAAAAACTTCTCTTTTGCTAGGAAGCTGCACATCTCCGGAATATTCTTCACCATTGGACAATCATGATGTTAATTCCAACTATCACATACCATATCTTAAGCAAGACTACGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGCTGCACAACTGCAAAAATTTACAATCAGCCAAATTGTACCTGAGCAAGGTTATGCCACTGAGAATACCAAGGTCATTATTATGGGATCTTTTCTTTGTGATCCTTCAGAATCTCTATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTTCTTTGTTGCGAAGCACCTCCACATCTTCCTGGGAAGGTTTCTTTCTGCGTTACGTCTGGCAATCGGGAACCTTGTAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAATCACATTCCAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTACGCAATTGCTGCTCTCTGACTCCGACACGGTAGATTCTGAAGTTAGGAGCAACAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAAGCTCTTTTAGTTGGTAATGAAACACCTTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAGGTTGCATCAGTGGCTTTCTTCCGAGCGGAGTGATAGACATGATCCAGGAAGCTGTTCCTTGTCCAAAAAACAACAGAGCATTATACACATGATTTCTGGTTTGGACTATGTGTGGGCATTAGGCCCAATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCATTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGAAGCATCAGCTGGTGCGGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACCGCGGCGACTATTGCAGACATCTATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGCTGAGCTTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTAAGTTGCATTTCAGAGAGGAACCTCTGTTCCACTGAGGATTATATCCCTCTAAAAGATACGTTAGCTGCAGTCAGGAATGCTTCTCAGGCAGCAGCCCGTATTCAATCTGCTTTTCGTGCACATTCGTTCAGAAAACGGCAGGAGAAGGAGGAAGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAGATGACATACAGGGGCTCTTAGCTATGTCGAAGTTGAACTTTTCTAATCGACGCGATTACAATACTGCTGCATTATCTATTCAAAAGAAGTATAGAGGTTGGAAAGGCCGTAAAGAGTTTTTATCAATTCGTCAGAAGGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTGTTGCGTTGGAGAAGGAAAGGTATTGGTTTGAGAGGATTTCATAGTGGGATAGGGTCCATTGATGAAAATGAAGATGATGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGCACTATCGACGAGGCTGTTTCACAAGTGCTATCGATGGTCGACTCTCCAGATGCTCGTCGGCAATACCATCGCATGCTTGAAGGATTTCGAAAAGCTAAGGCTGAACTCAATGGCGCCGGTGGCGCATCTGCAGCATCAATTTCTCTCGGCAATGCTTCGGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG | 2850 | 41.75 | MMNAGYDINDLYREAQTRWLKAPEVYFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGASEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRSGTENVPQLSSASPSTFGSGSSQNLASESQQNSLSPGSVEVSDTDHCTIESNGVDGQCEISELKSSNQCEVSQALRRLEEQLSLNEDSLKDIGPFYGHEAGSNSNLVDYHEMLNEDQFSVLQPGADPDANEKHHHYAMAHEFMFGSEGTQSWGDALFSSKTTDLESQDRHSLLWNENQEKLSSSSSKSTPVDNEYCNWVHSREKTSLLLGSCTSPEYSSPLDNHDVNSNYHIPYLKQDYGNSFEVDTSLIAAQLQKFTISQIVPEQGYATENTKVIIMGSFLCDPSESLWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVSFCVTSGNREPCSEFREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLTQLLLSDSDTVDSEVRSNNLKAGDDQWSSLIEALLVGNETPSSTIDWLLQELLKDRLHQWLSSERSDRHDPGSCSLSKKQQSIIHMISGLDYVWALGPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAATIADIYGHKGLAGYLSEVALTTHLSSLTFEEAELSKGSAEVEAEMTVSCISERNLCSTEDYIPLKDTLAAVRNASQAAARIQSAFRAHSFRKRQEKEEVFAACIDEYGIDPDDIQGLLAMSKLNFSNRRDYNTAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGIGLRGFHSGIGSIDENEDDDIIKVFRKQKVEGTIDEAVSQVLSMVDSPDARRQYHRMLEGFRKAKAELNGAGGASAASISLGNASGMEDCNQYPKFV | 949 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3518840 | 3549878 | - | Sed0008606.1 | Sed09g0385 | 725149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0385 | 949 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 780 | 839 | IPR027417 | - | |
Sed09g0385 | 949 | SMART | ANK_2a | 613 | 642 | IPR002110 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | Pfam | IPT/TIG domain | 390 | 461 | IPR002909 | - | |
Sed09g0385 | 949 | Gene3D | - | 788 | 835 | - | - | |
Sed09g0385 | 949 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 8 | 134 | IPR005559 | GO:0003677(InterPro) | |
Sed09g0385 | 949 | FunFam | Calmodulin-binding transcription activator 2 | 787 | 835 | - | - | |
Sed09g0385 | 949 | ProSiteProfiles | Ankyrin repeat region circular profile. | 613 | 639 | - | - | |
Sed09g0385 | 949 | MobiDBLite | consensus disorder prediction | 133 | 179 | - | - | |
Sed09g0385 | 949 | Pfam | IQ calmodulin-binding motif | 813 | 832 | IPR000048 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | Pfam | IQ calmodulin-binding motif | 791 | 808 | IPR000048 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | Pfam | CG-1 domain | 14 | 127 | IPR005559 | GO:0003677(InterPro) | |
Sed09g0385 | 949 | Gene3D | Immunoglobulins | 384 | 477 | IPR013783 | - | |
Sed09g0385 | 949 | SMART | iq_5 | 787 | 809 | IPR000048 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | SMART | iq_5 | 730 | 752 | IPR000048 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | SMART | iq_5 | 810 | 832 | IPR000048 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | ProSiteProfiles | IQ motif profile. | 788 | 817 | - | - | |
Sed09g0385 | 949 | ProSiteProfiles | Ankyrin repeat profile. | 613 | 645 | IPR002110 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | SMART | CG_1_2 | 11 | 129 | IPR005559 | GO:0003677(InterPro) | |
Sed09g0385 | 949 | CDD | IPT | 390 | 474 | - | - | |
Sed09g0385 | 949 | ProSiteProfiles | IQ motif profile. | 731 | 759 | - | - | |
Sed09g0385 | 949 | ProSiteProfiles | IQ motif profile. | 811 | 835 | - | - | |
Sed09g0385 | 949 | Pfam | Ankyrin repeats (3 copies) | 600 | 673 | IPR002110 | GO:0005515(InterPro) | |
Sed09g0385 | 949 | SUPERFAMILY | Ankyrin repeat | 578 | 675 | IPR036770 | - | |
Sed09g0385 | 949 | Gene3D | - | 554 | 683 | IPR036770 | - | |
Sed09g0385 | 949 | SUPERFAMILY | E set domains | 390 | 473 | IPR014756 | - | |
Sed09g0385 | 949 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 6 | 917 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0086 | Sed-Chr7:898735 | Sed09g0385 | Sed-Chr9:3518840 | 0.00E+00 | dispersed | |
Sed07g0087 | Sed-Chr7:898735 | Sed09g0385 | Sed-Chr9:3518840 | 0.00E+00 | dispersed | |
Sed09g0385 | Sed-Chr9:3518840 | Sed13g0919 | Sed-Chr13:6879784 | 5.20E-135 | dispersed | |
Sed07g0085 | Sed-Chr7:898735 | Sed09g0385 | Sed-Chr9:3518840 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39523 | PF03859 | CG-1 | 4.60E-47 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0385 | K21596 | - | csv:101222798 | 1524.61 |