Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0385 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGGCTCCAGAGGTGTATTTTATTTTACAGAATCATGAAAATTATCAGCTGACGGAGGAGGCCCCAAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTTCGTTTCTTTCGTAAAGATGGTCATAGTTGGCGAAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAGCTTCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTTGACCACATTGTTCTTGTACACTACAGAGATATTAATGAGGGAAGGTCTGGGACGGAAAACGTTCCACAGTTATCTTCAGCATCGCCTTCTACCTTTGGTTCCGGTTCATCTCAAAATCTTGCTTCGGAAAGTCAACAAAATTCATTGAGCCCAGGGTCTGTAGAAGTTTCTGACACTGACCACTGTACTATTGAGTCAAATGGAGTGGATGGGCAGTGTGAAATATCAGAATTAAAAAGTTCAAACCAATGTGAGGTTTCTCAAGCTTTGAGAAGGTTAGAGGAGCAATTAAGTCTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGCAGGTTCAAATTCTAATCTTGTCGACTACCATGAGATGCTCAATGAGGATCAGTTTTCAGTGCTTCAGCCAGGAGCAGACCCAGATGCTAATGAAAAACATCACCATTACGCTATGGCACACGAGTTTATGTTTGGTAGTGAAGGAACTCAATCATGGGGTGATGCACTTTTTTCAAGTAAGACAACAGATCTTGAGTCTCAAGATAGACATTCACTCCTATGGAATGAAAATCAGGAAAAGCTATCATCATCTTCAAGTAAAAGTACACCTGTAGACAATGAATATTGCAACTGGGTGCACAGCAGAGAAAAAACTTCTCTTTTGCTAGGAAGCTGCACATCTCCGGAATATTCTTCACCATTGGACAATCATGATGTTAATTCCAACTATCACATACCATATCTTAAGCAAGACTACGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGCTGCACAACTGCAAAAATTTACAATCAGCCAAATTGTACCTGAGCAAGGTTATGCCACTGAGAATACCAAGGTCATTATTATGGGATCTTTTCTTTGTGATCCTTCAGAATCTCTATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTTCTTTGTTGCGAAGCACCTCCACATCTTCCTGGGAAGGTTTCTTTCTGCGTTACGTCTGGCAATCGGGAACCTTGTAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAATCACATTCCAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTACGCAATTGCTGCTCTCTGACTCCGACACGGTAGATTCTGAAGTTAGGAGCAACAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAAGCTCTTTTAGTTGGTAATGAAACACCTTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAGGTTGCATCAGTGGCTTTCTTCCGAGCGGAGTGATAGACATGATCCAGGAAGCTGTTCCTTGTCCAAAAAACAACAGAGCATTATACACATGATTTCTGGTTTGGACTATGTGTGGGCATTAGGCCCAATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCATTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGAAGCATCAGCTGGTGCGGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACCGCGGCGACTATTGCAGACATCTATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGCTGAGCTTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTAAGTTGCATTTCAGAGAGGAACCTCTGTTCCACTGAGGATTATATCCCTCTAAAAGATACGTTAGCTGCAGTCAGGAATGCTTCTCAGGCAGCAGCCCGTATTCAATCTGCTTTTCGTGCACATTCGTTCAGAAAACGGCAGGAGAAGGAGGAAGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAGATGACATACAGGGGCTCTTAGCTATGTCGAAGTTGAACTTTTCTAATCGACGCGATTACAATACTGCTGCATTATCTATTCAAAAGAAGTATAGAGGTTGGAAAGGCCGTAAAGAGTTTTTATCAATTCGTCAGAAGGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTGTTGCGTTGGAGAAGGAAAGGTATTGGTTTGAGAGGATTTCATAGTGGGATAGGGTCCATTGATGAAAATGAAGATGATGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGCACTATCGACGAGGCTGTTTCACAAGTGCTATCGATGGTCGACTCTCCAGATGCTCGTCGGCAATACCATCGCATGCTTGAAGGATTTCGAAAAGCTAAGGCTGAACTCAATGGCGCCGGTGGCGCATCTGCAGCATCAATTTCTCTCGGCAATGCTTCGGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG 2850 41.75 MMNAGYDINDLYREAQTRWLKAPEVYFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGASEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRSGTENVPQLSSASPSTFGSGSSQNLASESQQNSLSPGSVEVSDTDHCTIESNGVDGQCEISELKSSNQCEVSQALRRLEEQLSLNEDSLKDIGPFYGHEAGSNSNLVDYHEMLNEDQFSVLQPGADPDANEKHHHYAMAHEFMFGSEGTQSWGDALFSSKTTDLESQDRHSLLWNENQEKLSSSSSKSTPVDNEYCNWVHSREKTSLLLGSCTSPEYSSPLDNHDVNSNYHIPYLKQDYGNSFEVDTSLIAAQLQKFTISQIVPEQGYATENTKVIIMGSFLCDPSESLWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVSFCVTSGNREPCSEFREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLTQLLLSDSDTVDSEVRSNNLKAGDDQWSSLIEALLVGNETPSSTIDWLLQELLKDRLHQWLSSERSDRHDPGSCSLSKKQQSIIHMISGLDYVWALGPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAATIADIYGHKGLAGYLSEVALTTHLSSLTFEEAELSKGSAEVEAEMTVSCISERNLCSTEDYIPLKDTLAAVRNASQAAARIQSAFRAHSFRKRQEKEEVFAACIDEYGIDPDDIQGLLAMSKLNFSNRRDYNTAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGIGLRGFHSGIGSIDENEDDDIIKVFRKQKVEGTIDEAVSQVLSMVDSPDARRQYHRMLEGFRKAKAELNGAGGASAASISLGNASGMEDCNQYPKFV 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3518840 3549878 - Sed0008606.1 Sed09g0385 725149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0385 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 839 IPR027417 -
Sed09g0385 949 SMART ANK_2a 613 642 IPR002110 GO:0005515(InterPro)
Sed09g0385 949 Pfam IPT/TIG domain 390 461 IPR002909 -
Sed09g0385 949 Gene3D - 788 835 - -
Sed09g0385 949 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Sed09g0385 949 FunFam Calmodulin-binding transcription activator 2 787 835 - -
Sed09g0385 949 ProSiteProfiles Ankyrin repeat region circular profile. 613 639 - -
Sed09g0385 949 MobiDBLite consensus disorder prediction 133 179 - -
Sed09g0385 949 Pfam IQ calmodulin-binding motif 813 832 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 Pfam IQ calmodulin-binding motif 791 808 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Sed09g0385 949 Gene3D Immunoglobulins 384 477 IPR013783 -
Sed09g0385 949 SMART iq_5 787 809 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 SMART iq_5 730 752 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 SMART iq_5 810 832 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 ProSiteProfiles IQ motif profile. 788 817 - -
Sed09g0385 949 ProSiteProfiles Ankyrin repeat profile. 613 645 IPR002110 GO:0005515(InterPro)
Sed09g0385 949 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Sed09g0385 949 CDD IPT 390 474 - -
Sed09g0385 949 ProSiteProfiles IQ motif profile. 731 759 - -
Sed09g0385 949 ProSiteProfiles IQ motif profile. 811 835 - -
Sed09g0385 949 Pfam Ankyrin repeats (3 copies) 600 673 IPR002110 GO:0005515(InterPro)
Sed09g0385 949 SUPERFAMILY Ankyrin repeat 578 675 IPR036770 -
Sed09g0385 949 Gene3D - 554 683 IPR036770 -
Sed09g0385 949 SUPERFAMILY E set domains 390 473 IPR014756 -
Sed09g0385 949 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 917 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0086 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 dispersed
Sed07g0087 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 dispersed
Sed09g0385 Sed-Chr9:3518840 Sed13g0919 Sed-Chr13:6879784 5.20E-135 dispersed
Sed07g0085 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39523 PF03859 CG-1 4.60E-47 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0385 K21596 - csv:101222798 1524.61