Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0385 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGGCTCCAGAGGTGTATTTTATTTTACAGAATCATGAAAATTATCAGCTGACGGAGGAGGCCCCAAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTTCGTTTCTTTCGTAAAGATGGTCATAGTTGGCGAAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAGCTTCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCCGTCATTTGACCACATTGTTCTTGTACACTACAGAGATATTAATGAGGGAAGGTCTGGGACGGAAAACGTTCCACAGTTATCTTCAGCATCGCCTTCTACCTTTGGTTCCGGTTCATCTCAAAATCTTGCTTCGGAAAGTCAACAAAATTCATTGAGCCCAGGGTCTGTAGAAGTTTCTGACACTGACCACTGTACTATTGAGTCAAATGGAGTGGATGGGCAGTGTGAAATATCAGAATTAAAAAGTTCAAACCAATGTGAGGTTTCTCAAGCTTTGAGAAGGTTAGAGGAGCAATTAAGTCTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGCAGGTTCAAATTCTAATCTTGTCGACTACCATGAGATGCTCAATGAGGATCAGTTTTCAGTGCTTCAGCCAGGAGCAGACCCAGATGCTAATGAAAAACATCACCATTACGCTATGGCACACGAGTTTATGTTTGGTAGTGAAGGAACTCAATCATGGGGTGATGCACTTTTTTCAAGTAAGACAACAGATCTTGAGTCTCAAGATAGACATTCACTCCTATGGAATGAAAATCAGGAAAAGCTATCATCATCTTCAAGTAAAAGTACACCTGTAGACAATGAATATTGCAACTGGGTGCACAGCAGAGAAAAAACTTCTCTTTTGCTAGGAAGCTGCACATCTCCGGAATATTCTTCACCATTGGACAATCATGATGTTAATTCCAACTATCACATACCATATCTTAAGCAAGACTACGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGCTGCACAACTGCAAAAATTTACAATCAGCCAAATTGTACCTGAGCAAGGTTATGCCACTGAGAATACCAAGGTCATTATTATGGGATCTTTTCTTTGTGATCCTTCAGAATCTCTATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTTCTTTGTTGCGAAGCACCTCCACATCTTCCTGGGAAGGTTTCTTTCTGCGTTACGTCTGGCAATCGGGAACCTTGTAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAATCACATTCCAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTACGCAATTGCTGCTCTCTGACTCCGACACGGTAGATTCTGAAGTTAGGAGCAACAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAAGCTCTTTTAGTTGGTAATGAAACACCTTCTAGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGATAGGTTGCATCAGTGGCTTTCTTCCGAGCGGAGTGATAGACATGATCCAGGAAGCTGTTCCTTGTCCAAAAAACAACAGAGCATTATACACATGATTTCTGGTTTGGACTATGTGTGGGCATTAGGCCCAATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCATTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGAAGCATCAGCTGGTGCGGTAACTGATCCTAATTCACAAGATCCAGTTGGTAAAACCGCGGCGACTATTGCAGACATCTATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGCTGAGCTTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTAAGTTGCATTTCAGAGAGGAACCTCTGTTCCACTGAGGATTATATCCCTCTAAAAGATACGTTAGCTGCAGTCAGGAATGCTTCTCAGGCAGCAGCCCGTATTCAATCTGCTTTTCGTGCACATTCGTTCAGAAAACGGCAGGAGAAGGAGGAAGTTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAGATGACATACAGGGGCTCTTAGCTATGTCGAAGTTGAACTTTTCTAATCGACGCGATTACAATACTGCTGCATTATCTATTCAAAAGAAGTATAGAGGTTGGAAAGGCCGTAAAGAGTTTTTATCAATTCGTCAGAAGGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTGTTGCGTTGGAGAAGGAAAGGTATTGGTTTGAGAGGATTTCATAGTGGGATAGGGTCCATTGATGAAAATGAAGATGATGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGCACTATCGACGAGGCTGTTTCACAAGTGCTATCGATGGTCGACTCTCCAGATGCTCGTCGGCAATACCATCGCATGCTTGAAGGATTTCGAAAAGCTAAGGCTGAACTCAATGGCGCCGGTGGCGCATCTGCAGCATCAATTTCTCTCGGCAATGCTTCGGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG 2850 41.75 MMNAGYDINDLYREAQTRWLKAPEVYFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGASEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRSGTENVPQLSSASPSTFGSGSSQNLASESQQNSLSPGSVEVSDTDHCTIESNGVDGQCEISELKSSNQCEVSQALRRLEEQLSLNEDSLKDIGPFYGHEAGSNSNLVDYHEMLNEDQFSVLQPGADPDANEKHHHYAMAHEFMFGSEGTQSWGDALFSSKTTDLESQDRHSLLWNENQEKLSSSSSKSTPVDNEYCNWVHSREKTSLLLGSCTSPEYSSPLDNHDVNSNYHIPYLKQDYGNSFEVDTSLIAAQLQKFTISQIVPEQGYATENTKVIIMGSFLCDPSESLWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVSFCVTSGNREPCSEFREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLTQLLLSDSDTVDSEVRSNNLKAGDDQWSSLIEALLVGNETPSSTIDWLLQELLKDRLHQWLSSERSDRHDPGSCSLSKKQQSIIHMISGLDYVWALGPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPNSQDPVGKTAATIADIYGHKGLAGYLSEVALTTHLSSLTFEEAELSKGSAEVEAEMTVSCISERNLCSTEDYIPLKDTLAAVRNASQAAARIQSAFRAHSFRKRQEKEEVFAACIDEYGIDPDDIQGLLAMSKLNFSNRRDYNTAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGIGLRGFHSGIGSIDENEDDDIIKVFRKQKVEGTIDEAVSQVLSMVDSPDARRQYHRMLEGFRKAKAELNGAGGASAASISLGNASGMEDCNQYPKFV 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3518840 3549878 - Sed0008606.1 Sed09g0385 725149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0385 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 839 IPR027417 -
Sed09g0385 949 SMART ANK_2a 613 642 IPR002110 GO:0005515(InterPro)
Sed09g0385 949 Pfam IPT/TIG domain 390 461 IPR002909 -
Sed09g0385 949 Gene3D - 788 835 - -
Sed09g0385 949 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Sed09g0385 949 FunFam Calmodulin-binding transcription activator 2 787 835 - -
Sed09g0385 949 ProSiteProfiles Ankyrin repeat region circular profile. 613 639 - -
Sed09g0385 949 MobiDBLite consensus disorder prediction 133 179 - -
Sed09g0385 949 Pfam IQ calmodulin-binding motif 813 832 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 Pfam IQ calmodulin-binding motif 791 808 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Sed09g0385 949 Gene3D Immunoglobulins 384 477 IPR013783 -
Sed09g0385 949 SMART iq_5 787 809 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 SMART iq_5 730 752 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 SMART iq_5 810 832 IPR000048 GO:0005515(InterPro)
Sed09g0385 949 ProSiteProfiles IQ motif profile. 788 817 - -
Sed09g0385 949 ProSiteProfiles Ankyrin repeat profile. 613 645 IPR002110 GO:0005515(InterPro)
Sed09g0385 949 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Sed09g0385 949 CDD IPT 390 474 - -
Sed09g0385 949 ProSiteProfiles IQ motif profile. 731 759 - -
Sed09g0385 949 ProSiteProfiles IQ motif profile. 811 835 - -
Sed09g0385 949 Pfam Ankyrin repeats (3 copies) 600 673 IPR002110 GO:0005515(InterPro)
Sed09g0385 949 SUPERFAMILY Ankyrin repeat 578 675 IPR036770 -
Sed09g0385 949 Gene3D - 554 683 IPR036770 -
Sed09g0385 949 SUPERFAMILY E set domains 390 473 IPR014756 -
Sed09g0385 949 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 917 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0385 K21596 - - csv:101222798 1524.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0086 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 dispersed
Sed07g0087 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 dispersed
Sed09g0385 Sed-Chr9:3518840 Sed13g0919 Sed-Chr13:6879784 5.20E-135 dispersed
Sed07g0085 Sed-Chr7:898735 Sed09g0385 Sed-Chr9:3518840 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed06g0965 . 1 1093 CAMTA Transcription Factor Family AT5G64220 52.7 4.8e-275 945.3
Sed06g0966 . 1 1102 CAMTA Transcription Factor Family AT5G64220 52.1 1.3e-272 937.2
Sed10g1851 . 1 1077 CAMTA Transcription Factor Family AT5G64220 52.7 5.2e-269 925.2
Sed07g0085 . 5 952 CAMTA Transcription Factor Family AT1G67310 51.0 2.1e-251 866.7
Sed07g0086 . 5 913 CAMTA Transcription Factor Family AT1G67310 50.4 9.2e-247 851.3
Sed09g0385 . 6 920 CAMTA Transcription Factor Family AT1G67310 50.7 3.3e-244 842.8
Sed04g1759 . 7 629 CAMTA Transcription Factor Family AT4G16150 53.1 4.1e-193 672.9
Sed04g1759 . 35 910 CAMTA Transcription Factor Family AT3G16940 52.7 7.4e-247 851.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39523 PF03859 CG-1 4.60E-47 No_clan Sed TF