Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0398 ATGATGAGAGAGAGAAGAAAGTGCTTTGTAATGGGCATAATAATGTCAATATTATTGATGAGTTTCATTTGCAATGTGCAAAGTGAAAACACATTGCAGCCACCAGTGAAGGTAATATGGCATTACTATAAGCTCAAAACAACTTGCCCTGATGCTGAAGCTTTCATAAAGCATGAAGTTTATTTGTTTTGGAAAGAGAACAAGAACATCACTGCCAGTTTCCTTCGTTTGCTCTCTGCTGATTGCCTCTCCAAAAATGGTTGTGATGCTTCAATACTACTTGATGGTCCAAACTCAGAAAAAGATGCACCACAAAACAAAGGCCTAGAAGGGTTTGATGAAATTGACAAGATCAAAACCGTACTCGAAGCCCGATGCAAGGGCGTTGTTTCGTGCGCAGATATTCTCAACTTGGCCACTCGAGATGCTGTTCATTTGGCAGGTGCACCATCTTATCCAGTGTTTACAGGGAGGAGGGATGGCTTTAGATCAAGTGTTGATGAAGTGGATTTTCCATCCCCATCAATATCATGGCAAGAAGGGCTTGCATATTTTCAATCTAAAGGTCTTGATGTTTTAGACATGACAACACTGTTAGGTGCACATTCAATGGGAAAAACACACTGTCGCTACATCAAGGACAGGCTTTACAATTTCAAGGGCACAAAAAAGCCAGATCCAACAATGAACAAATCATTCTTAAAAGAGCTTCAAAAAAAATGCCCAAAAAACTCAAAAAAAGACCCAATGGTGAACCTAACACCAAAATCTGGAAATGACTATCAATTCACAGGTCAATACTACTCGAGGATCCTTTCAAAGAAGGCGGTCCTCGGCATTGATCAACAGCTTCTTCTCGGGAACGACACGAAGGAAATCACCCAAGAGTTTGCCCCGAAATCTGGATTCGAAGACTTACGCAGGTCCTTTGCTCTTTCCATGAGTAGGATGGGAAACATCAAGGTTTTGACCGGAAAAGATGGCGAGATTCGGAAAAATTGTCGATGGAGAAACTAG 1017 41.3 MMRERRKCFVMGIIMSILLMSFICNVQSENTLQPPVKVIWHYYKLKTTCPDAEAFIKHEVYLFWKENKNITASFLRLLSADCLSKNGCDASILLDGPNSEKDAPQNKGLEGFDEIDKIKTVLEARCKGVVSCADILNLATRDAVHLAGAPSYPVFTGRRDGFRSSVDEVDFPSPSISWQEGLAYFQSKGLDVLDMTTLLGAHSMGKTHCRYIKDRLYNFKGTKKPDPTMNKSFLKELQKKCPKNSKKDPMVNLTPKSGNDYQFTGQYYSRILSKKAVLGIDQQLLLGNDTKEITQEFAPKSGFEDLRRSFALSMSRMGNIKVLTGKDGEIRKNCRWRN 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3780154 3783596 - Sed0027192.1 Sed09g0398 725162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0398 338 PRINTS Haem peroxidase superfamily signature 148 160 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Haem peroxidase superfamily signature 130 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Haem peroxidase superfamily signature 71 85 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 FunFam Peroxidase 172 317 - -
Sed09g0398 338 ProSiteProfiles Plant heme peroxidase family profile. 37 338 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PANTHER PEROXIDASE 25-RELATED 42 334 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed09g0398 338 Pfam Peroxidase 59 298 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 Gene3D - 42 338 - -
Sed09g0398 338 Gene3D Peroxidase, domain 2 172 317 - -
Sed09g0398 338 CDD secretory_peroxidase 40 335 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed09g0398 338 SUPERFAMILY Heme-dependent peroxidases 45 338 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
Sed09g0398 338 PRINTS Plant peroxidase signature 312 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Plant peroxidase signature 270 287 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Plant peroxidase signature 129 139 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Plant peroxidase signature 110 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Plant peroxidase signature 148 163 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0398 338 PRINTS Plant peroxidase signature 73 93 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0398 Sed-Chr9:3780154 Sed01g0335 Sed-Chr1:2527247 1.70E-51 dispersed
Sed09g0398 Sed-Chr9:3780154 Sed04g3510 Sed-Chr4:44585794 1.00E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0398 K00430 - csv:101213667 556.599