Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0401 ATGGACATAACTTTTTTCACAGCCAAAGATCAAGTCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCTTCATCATCATCATCTTCAATTCTCCAATATAGACATGCAAAGCTCCACGAGCCAATCGTCCGAGCACTCACCCGAGCACTCTTCGTCCGCCGCCGCCTCCGCCGCAAGCTCCGGGAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGGGCAATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGCGACTCCGACCAGAAAATGGCTTCATATTTCTTGCAAGCTCTCTTTTGTAGGGCCACTGAGACTGGCCTTAGTTGCTACAAGACCCTCGTTTCGGTCGCCGAGAAAAATCACTCCTTCGACTCAGCTTTGAGGTTGATCCTCAAGTTTCAAGAGGCAAGTCCATGGACGACATTCGGGCATGTAGGGGCGAACGGTGCGATTCTTGAGGCCCTCGAGGGAGAATCGAAGCTTCACATAATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACACCACATCTCAAGCTCACGGTTGTATCAACAACAAGCATAGTGAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCATTCGAGTTCAATCCCATAACAAATCTAAATCGCTTAACCGATCTCACAAATGAAGCCCTAAAAGTGGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAGTTGAAGAGAGAAACAATGTAATTTCAATGTTGAAGTCATTAAAGCCTAGGGTTTTAACAATTGTTGAGGAAGAAGCTGATTTTATTAGCCCTAAAAATGATTTCTTGAACTGCTTTGAAGAGTGTCTTAGATTTTACACTCTTTACTTTGAGATGTTGGAGGAGAGCTTTGTGGCAACAAGTAATGAGAGATTGATTTTGGAAAGGGAGTGTTCAAGGAATATTGTGAGGCTTTTGGGGTGTGATAATGAAAATGATGAAGAAATCATAGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGAGCAAAAGGCTAAAAGATGCAACTTTTTCATTAGCTGGATTTAGTGATGATGTTATGGATGATGTTAAGGCTCTGCTCAAGCGGTACAAACCCGGTTGGGCGTTGTTGCACCGTGCTACCACCACCACGACTGCCACTGAGACCGACGACGTCATCGAAGTAGACGAAGTTGGTGGTGGTGATTCAAGTGGAATTTACTTGACATGGAAGGAAGAGCCAGTGGTGTGGGTTTCAGCATGGAAACCCTAA 1386 45.02 MDITFFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASAASSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVRLLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3830446 3832975 + Sed0012094.1 Sed09g0401 725165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0401 461 ProSiteProfiles GRAS family profile. 56 460 IPR005202 -
Sed09g0401 461 Pfam GRAS domain family 67 460 IPR005202 -
Sed09g0401 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 459 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed09g0401 461 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0401 Sed-Chr9:3830446 Sed10g0719 Sed-Chr10:5020101 3.10E-117 dispersed
Sed09g0401 Sed-Chr9:3830446 Sed14g0906 Sed-Chr14:18007399 8.10E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39525 PF03514 GRAS 2.70E-93 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0401 K27743 - csv:101206730 729.554