Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0407 ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCGGCGACTGTGATTTGTTGCGCCGATGAAGCGGCGCTTTGTGCGAAGTGCGATGTTGAAGTTCATGCTGCTAACAAGCTTGCCAGTAAGCACCAGCGGCTTCTTCTTCAGTGTCTCTCCACTAAGCTTCCCAAATGCGATATTTGTCAGGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGACTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCTTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACTAAGGATATCGACAAGGTCAAAATGGAACCACCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTCCACAACAAGTTCCTAACTTCACGTCGACGTCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATGTCGAGTCCTCTGACAAGGAGAAAGAACATCTAGAGTTTGGAGAACTCGAATGGCTAGCAGAAATGGGCCTCTTCGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCGGGTGGTGCATTTGCATGCAGACCGACAAAGTCGAGCATGTCATACAAGAAGCCACGGATCGAGGTGGTAGACGATGAAGAGTTTTTTACAGTTCCTGATCTTGGATGA 720 47.78 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDIDKVKMEPPNPKNPQVPAKMPPQQVPNFTSTSPWAVDDFLHFSDVESSDKEKEHLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGGAFACRPTKSSMSYKKPRIEVVDDEEFFTVPDLG 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3899150 3903738 + Sed0011509.1 Sed09g0407 725171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0407 239 Gene3D Classic Zinc Finger 1 120 - -
Sed09g0407 239 CDD Bbox1_BBX-like 56 98 IPR049808 -
Sed09g0407 239 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed09g0407 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed09g0407 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0407 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1531 Sed-Chr4:30130908 Sed09g0407 Sed-Chr9:3899150 6.20E-34 dispersed
Sed09g0407 Sed-Chr9:3899150 Sed11g1069 Sed-Chr11:26168050 4.80E-29 dispersed
Sed09g0407 Sed-Chr9:3899150 Sed13g0634 Sed-Chr13:4329231 1.10E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g4023 . 32 343 Orphan Transcription Factor Family AT5G61850 71.3 6.2e-112 402.1
Sed09g0407 . 1 169 Orphan Transcription Factor Family AT1G06040 67.8 6.1e-61 231.5
Sed13g0634 . 1 109 Orphan Transcription Factor Family AT1G06040 67.0 5.5e-38 155.2
Sed04g1531 . 1 109 Orphan Transcription Factor Family AT1G06040 67.0 3.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39526 PF00643 zf-B_box 1.50E-08 No_clan Sed TF