Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0418 ATGGCCAACGGCGGCGTCCCGAGCGGGTCCGGCCTGATCGTTAGTTTCGGCGAGATGCTGATCGACTTCGTCCCGACGGTCTCCGGCGTGTCGCTGGCGGAGGCGCCGGGGTTTCTGAAGGCTCCGGGCGGCGCTCCGGCGAACGTGGCGATCGCGGTGAGCCGGCTGGGCGGGCGAGCCGCGTTCGTCGGGAAGCTGGGCGACGACGAGTTCGGGCAGATGCTGGCGAAGATCGTGAAGTCGTACGGCGTGGAGGACGGGGGGATCTGCTTCGACACCGGCGCCAGGACCGCGCTGGCGTTCGTGACTCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGGAACCCTAGCGCCGATATGCTCCTCCGCCCCGACGAGTTGAATCTCCATCTCATCAAATCTGCCAAGATCTTTCACTATGGATCAATAAGCTTGATCGTTGAGCCATGCAGATCTGCCCACATGAAGGCAATGGACGAGGCCAAGAAAGCAGGCGCTCTACTTTCGTACGATCCAAATCTGCGGTTGCCTCTATGGCCCTCGGAAGACGAGGCCCGAACACAGATCAAGAGCATTTGGAACAAGGCTGACATCATCAAGGTCAGCGACGACGAGCTCAAATTCCTCACCAAATCCGACAAGGTCGATGACGAAACCGCCATGTCGCTGTGGCACGACAGCCTCAAGCTCCTCCTGCTCACTCTCGGCGAGCATGGCTGCAAATACTACACCAAGAAATTCCGCGGCACGGTGGATCCTTTCAAGGTCAAAACCGTAGACACAACTGGAGCTGGCGACTCGTTTGTTGGGGCTCTTCTTTGCAAGATTGTTGACGACCAATCTGTTCTCGAGGACGAGAAGAAGTTGAGGGAGATCCTTAAATTTGCGAACGCGTGTGGAGCCATTACGACAACCAAAAAGGGAGCAATCCCAGCTCTTCCAACAGAGGCTGATGTTGTAGCTTTGATCAAGGGTTCTTCAACCTAG 993 57.8 MANGGVPSGSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGRAAFVGKLGDDEFGQMLAKIVKSYGVEDGGICFDTGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLHLIKSAKIFHYGSISLIVEPCRSAHMKAMDEAKKAGALLSYDPNLRLPLWPSEDEARTQIKSIWNKADIIKVSDDELKFLTKSDKVDDETAMSLWHDSLKLLLLTLGEHGCKYYTKKFRGTVDPFKVKTVDTTGAGDSFVGALLCKIVDDQSVLEDEKKLREILKFANACGAITTTKKGAIPALPTEADVVALIKGSST 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4143143 4147283 - Sed0022515.1 Sed09g0418 725182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0418 330 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 262 275 IPR002173 GO:0016301(InterPro)
Sed09g0418 330 Gene3D - 11 330 IPR029056 -
Sed09g0418 330 CDD bac_FRK 12 312 - -
Sed09g0418 330 FunFam Probable fructokinase-2 10 329 - -
Sed09g0418 330 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 43 67 IPR002173 GO:0016301(InterPro)
Sed09g0418 330 PANTHER HEXOKINASE FAMILY MEMBER 12 322 IPR050306 GO:0005829(PANTHER)|GO:0006000(PANTHER)|GO:0008865(PANTHER)
Sed09g0418 330 PRINTS Ribokinase signature 233 244 IPR002139 GO:0016301(InterPro)
Sed09g0418 330 PRINTS Ribokinase signature 38 57 IPR002139 GO:0016301(InterPro)
Sed09g0418 330 PRINTS Ribokinase signature 193 208 IPR002139 GO:0016301(InterPro)
Sed09g0418 330 SUPERFAMILY Ribokinase-like 13 325 IPR029056 -
Sed09g0418 330 Pfam pfkB family carbohydrate kinase 12 317 IPR011611 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0418 K00847 - - csv:101213366 546.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0564 Sed-Chr5:4081706 Sed09g0418 Sed-Chr9:4143143 2.40E-106 dispersed
Sed07g0029 Sed-Chr7:595158 Sed09g0418 Sed-Chr9:4143143 8.50E-170 dispersed
Sed07g0030 Sed-Chr7:599617 Sed09g0418 Sed-Chr9:4143143 8.60E-170 dispersed
Sed02g0783 Sed-Chr2:45501385 Sed09g0418 Sed-Chr9:4143143 4.80E-49 transposed
Sed07g0028 Sed-Chr7:590817 Sed09g0418 Sed-Chr9:4143143 1.00E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44