Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0427 ATGGATTCCGAGGAAGATCTTCATTACTCCACCGACGACGATTGCGATTTCTACAGCGGCGATATGGACACGGGTATGGGCTATTACAGCGACGGTGATGATCCTGACGGTGAGGATTTCGTCGATGATGATGTTGATGATTACTTGGAGTCCCGTGGACGCGAGCTAAATTATACCATACTAAATGAGGTTGATATAAGACAACGACAAGAGGACGATGTTACAAGAATTTCTTCTGTACTTTCTATATCGCGTGTAACTTCAATTGCCTTACTTCACCACTTTAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGATCGAGTAAGAAAGCTAGTTGGCTTGTTGGAAGCACCCGTTGGACATGCCCTAAATGCTAGAGAACGGACATGTGGAATCTGTTTTGACTCCTATCCAAATAGTAGGATCAAGTCAGCTGCATGTGGTCATCCTTTCTGTGCCACCTGCTGGGAAGGTTACATTAGCACATCAATTAATGATGGTCCTGGATGCCTGATGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGGTTAATTCATTGGTTTCAAATGAAGATAGGGAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCTGCACCTGGTTGTGATCATGCTGTTCTCTTTGACGCTGGCAATGGAAATTATGATGTATCTTGCCACTGCACATATGGTTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCCACTGTAGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCGAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGCAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAAGAATTCATTGGAAAGATACACTCACTATTATGAACGTTGGGCGAGCAATCAAACTTCTAGGCAAAAAGCATTAACAGATTTGCATCAAATGCAGAATGTGAATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGAAGAGTTTTGAAATGGACATATGCATATGGATTTTACCTGCCAGAACAGGAGCATGCTAAGAGACAGTTTTTCGAGTATTTGCAAGGTGAGGCCGAGTCCGGACTAGAAAGGCTCCATCAATGTGCGGAAAAGGAACTACAACAGTTTCTCACTGCAGAAGGTCCGTTGAGAGAATTTAATGACTTCCGCACAAAGCTTGCGGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCGCACGGAACAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGCGGGGAGGAGTGGACGGGGTAAGGGAATCAGTAGAACCAGCTGCAGTTCGACCAGAAGCGGCGACGTCACTCATTGGTCGTGCAATCACTGTACCTTTGTGAACACGAGATCTGCTACCACATGCGAGATGTGCCATCAACACAATTGA 1761 43.73 MDSEEDLHYSTDDDCDFYSGDMDTGMGYYSDGDDPDGEDFVDDDVDDYLESRGRELNYTILNEVDIRQRQEDDVTRISSVLSISRVTSIALLHHFNWSVTKVHDEWFADEDRVRKLVGLLEAPVGHALNARERTCGICFDSYPNSRIKSAACGHPFCATCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQDMVNSLVSNEDREKYARYLLRSYVEDNKKTKWCPAPGCDHAVLFDAGNGNYDVSCHCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALTDLHQMQNVNIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELQQFLTAEGPLREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGTSSGTTSSKSTAGSSKAGRSGRGKGISRTSCSSTRSGDVTHWSCNHCTFVNTRSATTCEMCHQHN 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4287179 4295072 - Sed0026017.1 Sed09g0427 725191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0427 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Sed09g0427 586 Gene3D - 262 517 - -
Sed09g0427 586 CDD Rcat_RBR_ARI7-like 289 343 - -
Sed09g0427 586 MobiDBLite consensus disorder prediction 517 559 - -
Sed09g0427 586 SUPERFAMILY RING/U-box 285 333 - -
Sed09g0427 586 CDD BRcat_RBR_ANKIB1 211 275 - -
Sed09g0427 586 Gene3D - 557 586 - -
Sed09g0427 586 FunFam RBR-type E3 ubiquitin transferase 267 517 - -
Sed09g0427 586 SMART zf_4 561 585 IPR001876 -
Sed09g0427 586 SUPERFAMILY Ran binding protein zinc finger-like 560 584 IPR036443 -
Sed09g0427 586 SMART ibrneu5 204 266 IPR002867 GO:0008270(InterPro)
Sed09g0427 586 SMART ibrneu5 270 340 IPR002867 GO:0008270(InterPro)
Sed09g0427 586 Pfam IBR domain 288 328 - -
Sed09g0427 586 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Sed09g0427 586 FunFam RBR-type E3 ubiquitin transferase 129 218 - -
Sed09g0427 586 ProSiteProfiles Zinc finger RanBP2 type profile. 556 586 IPR001876 -
Sed09g0427 586 SUPERFAMILY RING/U-box 204 273 - -
Sed09g0427 586 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 68 107 IPR048962 -
Sed09g0427 586 Coils Coil 352 372 - -
Sed09g0427 586 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Sed09g0427 586 SUPERFAMILY RING/U-box 132 213 - -
Sed09g0427 586 Pfam Ariadne domain 353 515 IPR045840 -
Sed09g0427 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 110 394 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Sed09g0427 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 217 IPR013083 -
Sed09g0427 586 CDD RING-HC_ARI6-like 132 193 - -
Sed09g0427 586 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 GO:0008270(InterPro)
Sed09g0427 586 MobiDBLite consensus disorder prediction 517 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1846 Sed-Chr3:12283806 Sed09g0427 Sed-Chr9:4287179 1.20E-246 dispersed
Sed05g3636 Sed-Chr5:44628223 Sed09g0427 Sed-Chr9:4287179 3.40E-52 dispersed
Sed07g0043 Sed-Chr7:697464 Sed09g0427 Sed-Chr9:4287179 0.00E+00 wgd
Sed07g0043 Sed-Chr7:697464 Sed09g0427 Sed-Chr9:4287179 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0427 K11968 - csv:101223037 1060.44