Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0429 ATGGGATCATGCCTATCTGGGGACCGGGATAATCGAACGATCGCTTATTCTGAGGTCGCTTCGACATCTCGCGATGATAGCGTCGTTACCCGAAGGAACTCCAAGTCGAAGATTACGAAGAAGGGTTCTTCTCCCTCTAGTGTCTCTTCGAGGGAGATGTCGCTTCATCGAGTTCCTGGACGGATGTTTTTGAATGGATCAACTGATCATGCAACGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTCTGGGAGAATTTTGGTTCAAAAGAAGATACAATCTTTTGCGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTTTGTGCTCAGTTAGAATTGGAAGCTACCAAAAATGAAGAGAAGAATGATGCGAGATGTCGAGTAACTCCACCAAGGCCGATTAACAAGGACTCCGGAACCTCGGGTTTTGATCTTGATCGTCAGGGAACTAACAATGACATTTATGTCATGTTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACACCCATATGTTGATTCCTATAGCAGTGGTACAACATCAGTTGCTTTGGTCAAACAGGGTCGGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACCAGAGATAAATCTAACTCTCTCATTGCAGTTCAGTTGACTGTGGATCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAATGAGCCTGGGATTTTTAGGGTTTGGCTTCCCAACAGTGATTCTCCTGGTCTTGCAATGGCCAGAGCCTTTGGAGATTTCTGCTTAAAAGACTTCGGCGTCATAGCTGTTCCTGATGTTTCTTATTATCATCTTACTGAGAAAGACGAGTTTGTGGTACTGGCTACAGATGGGGTTTGGGATGTTCTCTCAAATGAAGAAGTTGTGGCAATTGTTGCGTCTTCTCCGAGATCCTCCGCAGCTCGTAACCTTGTGGATTCGGCTACTCGAGCGTGGAAATTTAAGTACCCTACTACCAAGATGGATGATTGTGCTGTAGTCTGCCTGTACCTGGACTCTAGTGAGAGTTCTTCATTGACATCCAAAGAGCAGGAGTTCACCAAGGAAATTGAAACTTAG 1209 44.58 MGSCLSGDRDNRTIAYSEVASTSRDDSVVTRRNSKSKITKKGSSPSSVSSREMSLHRVPGRMFLNGSTDHATLFTRQGKKGINQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLCAQLELEATKNEEKNDARCRVTPPRPINKDSGTSGFDLDRQGTNNDIYVMLKESFLKAFKVMDKELKLHPYVDSYSSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDKSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPGIFRVWLPNSDSPGLAMARAFGDFCLKDFGVIAVPDVSYYHLTEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARNLVDSATRAWKFKYPTTKMDDCAVVCLYLDSSESSSLTSKEQEFTKEIET 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4325155 4331979 + Sed0004089.1 Sed09g0429 725193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0429 402 CDD PP2Cc 76 381 IPR001932 -
Sed09g0429 402 Gene3D - 65 383 IPR036457 -
Sed09g0429 402 ProSiteProfiles PPM-type phosphatase domain profile. 70 381 IPR001932 -
Sed09g0429 402 MobiDBLite consensus disorder prediction 39 53 - -
Sed09g0429 402 SMART PP2C_4 59 379 IPR001932 -
Sed09g0429 402 MobiDBLite consensus disorder prediction 142 163 - -
Sed09g0429 402 Pfam Protein phosphatase 2C 84 359 IPR001932 -
Sed09g0429 402 SUPERFAMILY PP2C-like 70 382 IPR036457 -
Sed09g0429 402 PANTHER PROTEIN PHOSPHATASE 56 379 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed09g0429 402 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0052 Sed-Chr7:730525 Sed09g0429 Sed-Chr9:4325155 1.30E-169 dispersed
Sed07g0053 Sed-Chr7:730525 Sed09g0429 Sed-Chr9:4325155 1.30E-169 dispersed
Sed07g0054 Sed-Chr7:730525 Sed09g0429 Sed-Chr9:4325155 1.50E-122 dispersed
Sed07g0055 Sed-Chr7:730525 Sed09g0429 Sed-Chr9:4325155 1.50E-122 dispersed
Sed09g0429 Sed-Chr9:4325155 Sed09g0433 Sed-Chr9:4325431 2.00E-229 dispersed
Sed09g0429 Sed-Chr9:4325155 Sed09g0430 Sed-Chr9:4325155 2.00E-229 tandem
Sed08g1204 Sed-Chr8:24901493 Sed09g0429 Sed-Chr9:4325155 1.40E-121 transposed
Sed08g2852 Sed-Chr8:39723223 Sed09g0429 Sed-Chr9:4325155 3.90E-116 transposed
Sed11g1235 Sed-Chr11:28150901 Sed09g0429 Sed-Chr9:4325155 5.30E-128 transposed
Sed07g0051 Sed-Chr7:730525 Sed09g0429 Sed-Chr9:4325155 1.30E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0429 - - - 0.0