Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0434 ATGGGATCATGCCTATCTGGGGACCGGGATAATCGAACGATCGCTTATTCTGAGGTCGCTTCGACATCTCGCGATGATAGCGTCGTTACCCGAAGGAACTCCAAGTCGAAGATTACGAAGAAGGGTTCTTCTCCCTCTAGTGTCTCTTCGAGGGAGATGTCGCTTCATCGAGTTCCTGGACGGATGTTTTTGAATGGATCAACTGATCATGCAACGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTCTGGGAGAATTTTGGTTCAAAAGAAGATACAATCTTTTGCGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTTTGTGCTCAGTTAGAATTGGAAGCTACCAAAAATGAAGAGAAGAATGATGCGAGATGTCGAGTAACTCCACCAAGGCCGATTAACAAGGACTCCGGAACCTCGGGTTTTGATCTTGATCGTCAGGGAACTAACAATGACATTTATGTCATGTTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACACCCATATGTTGATTCCTATAGCAGTGGTACAACATCAGTTGCTTTGGTCAAACAGGGTCGGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACCAGAGATAAATCTAACTCTCTCATTGCAGTTCAGTTGACTGTGGATCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAATGAGCCTGGGATTTTTAGGGTTTGGCTTCCCAACAGTGATTCTCCTGGTCTTGCAATGGCCAGAGCCTTTGGAGATTTCTGCTTAAAAGACTTCGGCGTCATAGCTGTTCCTGATGTTTCTTATTATCATCTTACTGAGAAAGACGAGTTTGTGGTACTGGCTACAGATGGGGTTTGGGATGTTCTCTCAAATGAAGAAGTTGTGGCAATTGTTGCGTCTTCTCCGAGATCCTCCGCAGCTCGTAACCTTGTGGATTCGGCTACTCGAGCGTGGAAATTTAAGTACCCTACTACCAAGATGGATGATTGTGCTGTAGTCTGCCTGTACCTGGACTCTAGTGAGAGTTCTTCATTGACATCCAAAGAGCAGGTAGAAGCATTCAATTCACTAAACTGA 1209 44.5 MGSCLSGDRDNRTIAYSEVASTSRDDSVVTRRNSKSKITKKGSSPSSVSSREMSLHRVPGRMFLNGSTDHATLFTRQGKKGINQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLCAQLELEATKNEEKNDARCRVTPPRPINKDSGTSGFDLDRQGTNNDIYVMLKESFLKAFKVMDKELKLHPYVDSYSSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDKSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPGIFRVWLPNSDSPGLAMARAFGDFCLKDFGVIAVPDVSYYHLTEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARNLVDSATRAWKFKYPTTKMDDCAVVCLYLDSSESSSLTSKEQVEAFNSLN 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4325431 4331031 + Sed0004089.6 Sed09g0434 725198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0434 402 CDD PP2Cc 76 381 IPR001932 -
Sed09g0434 402 Gene3D - 65 383 IPR036457 -
Sed09g0434 402 ProSiteProfiles PPM-type phosphatase domain profile. 70 381 IPR001932 -
Sed09g0434 402 PANTHER PROTEIN PHOSPHATASE 56 379 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed09g0434 402 MobiDBLite consensus disorder prediction 39 53 - -
Sed09g0434 402 SMART PP2C_4 59 379 IPR001932 -
Sed09g0434 402 MobiDBLite consensus disorder prediction 142 163 - -
Sed09g0434 402 Pfam Protein phosphatase 2C 84 359 IPR001932 -
Sed09g0434 402 SUPERFAMILY PP2C-like 70 382 IPR036457 -
Sed09g0434 402 MobiDBLite consensus disorder prediction 22 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0431 Sed-Chr9:4325155 Sed09g0434 Sed-Chr9:4325431 4.50E-229 dispersed
Sed09g0432 Sed-Chr9:4325155 Sed09g0434 Sed-Chr9:4325431 4.50E-229 dispersed
Sed09g0434 Sed-Chr9:4325431 Sed11g1235 Sed-Chr11:28150901 1.10E-129 dispersed
Sed09g0433 Sed-Chr9:4325431 Sed09g0434 Sed-Chr9:4325431 3.90E-225 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0434 - - - 0.0