Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0518 ATGGCCATGGCGGCGGCGGCGATATTGAAGCTCCGTTGTCTCTGTCATCCTGATCCGGCCAGTCTCTCCCTTCCAACAACCCCTATTCTTTCCAAAACCCTAACCCTTAAATCTCGATTCCCCCATTATTCCTTTTCCATCCCTAACCCCTCGAAGTACAAGCCCCTCACGGCCGCCGCAGCTATCTCCGGTGAATATTCCGACGGCGACGACGACAAGCTCCGGGAAGAGTGCGGCGTCGTCGGAATCTATGGCGACCCAGAAGCCTCCCGCCTCTGCTGTTTGGGTCTCCACGACCTGCAGCATCGCGGTCAAGAAGGCGCCGGAATCGTCGCCGTCGACGACAACGTTTTTCGGTCCGTGACCGATCTCGGCCTCGTCGCCAATGTCTTCGATGAAGCAAAACTGGATCAATTGAGCGGCGAGTCTGCGATCGGGCATGTTCGTTACTCCACGGCGGGATCTTCCGTGCCCAAAAATGTTCAGCCCTTCGTTGCGGGCTACCGATTCGGCTCTGTTGGTGTTGCTCACAATGGTAATTTTGTTAATTATGCTAAACTTAGAGCTAAGCTTGAAGATTCTGGCTCCATTTTTAATACTAGTTCTGATACTGAGGTTGTTCTTCACCTCATTGCTGTTTCTAAACATAGGCCTTTCTTGTTGAGGATTTTGGATGCTTGTGAACAGCTTGAAGGTGCTTATTCCATGCTTTTTATTACTGAAGATAAGTTAATTGCTGTTCGCGATCCTCGCGGCTTTCGGCCTTTGGTTATGGGTAGGAGGAGCAATGGGGCTGTTGTTTTTGCTTCTGAAACTTGTGCTTTTCATTTAATGGAGGCTAAATATGAGAGGGAAGTGCAGCCGGGTGAAGTTGTGGTGGTTGACAAGGATGGGGTTCAATCCCTTTGTTTAATGGCTCATCCTCAACCCAAACATTGCATATTCGAACACATTTACTTTGCTTCCCCGAACTCGGTTGTTTTCGGGCGCTCTGTCTCCGATACCCGCCATGCATTCGGGGAGATACTTGCCACGGAAGCCCCGGTCGATTGTGATGTTGTGATTGGCGTCCCGGACTCAGGACTAGAGGCTGGCCTTGGCTATGCAGCCAAGGCCGGGGTGCCTTTCAGACATGGCCTCACTAGGTCTAAATACGTGGGGAGGACATTCATCGAGCCATTGCAGAAGAATCGCGACTTGGGCGTGAAGCTGAAGCTGTGTCCGGTTCGAGCAGTGTTGGAAGGGAAGAGGGTAGTGGTGGTGGATGATTCCATTGTTAGAGGAACAACATGTTCAAAGATTGTGAGGCTGTTGAGGGAAGCAGGGGCAAAAGAAGTGCATATGAGGATAGCCAGCCCTCCAATTATAGGGTCATGCTATTATGGGGTGGACACACCAAGCTCTAAAGAACTTATTTCCAACAGCAAAAGTGTGGAGGAGATAAGAAAGTTTATAGAAGCTGATTCACTTGCTTTTCTCTCATTTCATAGCTTGAAGAAGTATTTGGGTAATGAATCTTCAAACTATTGCTATGCTTGCATTTCAGGGAACTACCCAATTGAGCCCAGTCTAAACTAA 1578 49.43 MAMAAAAILKLRCLCHPDPASLSLPTTPILSKTLTLKSRFPHYSFSIPNPSKYKPLTAAAAISGEYSDGDDDKLREECGVVGIYGDPEASRLCCLGLHDLQHRGQEGAGIVAVDDNVFRSVTDLGLVANVFDEAKLDQLSGESAIGHVRYSTAGSSVPKNVQPFVAGYRFGSVGVAHNGNFVNYAKLRAKLEDSGSIFNTSSDTEVVLHLIAVSKHRPFLLRILDACEQLEGAYSMLFITEDKLIAVRDPRGFRPLVMGRRSNGAVVFASETCAFHLMEAKYEREVQPGEVVVVDKDGVQSLCLMAHPQPKHCIFEHIYFASPNSVVFGRSVSDTRHAFGEILATEAPVDCDVVIGVPDSGLEAGLGYAAKAGVPFRHGLTRSKYVGRTFIEPLQKNRDLGVKLKLCPVRAVLEGKRVVVVDDSIVRGTTCSKIVRLLREAGAKEVHMRIASPPIIGSCYYGVDTPSSKELISNSKSVEEIRKFIEADSLAFLSFHSLKKYLGNESSNYCYACISGNYPIEPSLN 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5177727 5179327 - Sed0000011.1 Sed09g0518 725282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0518 525 SUPERFAMILY PRTase-like 312 521 IPR029057 -
Sed09g0518 525 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 78 319 IPR029055 -
Sed09g0518 525 CDD GPATase_N 78 328 IPR035584 -
Sed09g0518 525 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 78 297 IPR017932 -
Sed09g0518 525 Hamap Amidophosphoribosyltransferase [purF]. 77 518 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Sed09g0518 525 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 72 522 - GO:0004044(PANTHER)|GO:0005737(PANTHER)|GO:0006164(PANTHER)
Sed09g0518 525 NCBIfam amidophosphoribosyltransferase 78 519 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Sed09g0518 525 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 78 519 IPR029055 -
Sed09g0518 525 PIRSF Pur1 74 525 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Sed09g0518 525 CDD PRTases_typeI 340 451 IPR000836 -
Sed09g0518 525 Gene3D - 337 501 IPR029057 -
Sed09g0518 525 Pfam Glutamine amidotransferase domain 155 275 IPR017932 -
Sed09g0518 525 Pfam Phosphoribosyl transferase domain 335 447 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0518 K00764 - - csv:101203840 773.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3558 Sed-Chr5:44180676 Sed09g0518 Sed-Chr9:5177727 2.60E-222 dispersed
Sed09g0518 Sed-Chr9:5177727 Sed01g0252 Sed-Chr1:1970613 1.20E-229 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1379 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed01g1380 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed03g1619 . 33 189 PRT Gene Family AT1G80050 78.3 9.6e-66 247.3
Sed05g0981 . 30 180 PRT Gene Family AT1G80050 76.2 2.9e-62 235.7
Sed01g4012 . 30 180 PRT Gene Family AT1G80050 76.8 1.4e-61 233.4
Sed04g0771 . 27 177 PRT Gene Family AT1G80050 74.8 2.5e-61 232.6
Sed10g1206 . 98 247 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed10g1207 . 54 203 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed01g4014 . 13 130 PRT Gene Family AT1G80050 77.1 7.7e-47 184.5
Sed01g4013 . 28 143 PRT Gene Family AT1G80050 77.6 2.9e-46 182.6
Sed03g1619 . 1 148 PRT Gene Family AT5G11160 81.1 3.2e-64 242.3
Sed01g1379 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g1380 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g4012 . 8 145 PRT Gene Family AT5G11160 76.1 6.1e-55 211.5
Sed05g0981 . 8 145 PRT Gene Family AT5G11160 74.6 1.0e-54 210.7
Sed10g1206 . 76 213 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed10g1207 . 32 169 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed04g0771 . 5 142 PRT Gene Family AT5G11160 71.7 4.8e-52 201.8
Sed10g1206 . 69 249 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed10g1207 . 25 205 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed05g0981 . 1 180 PRT Gene Family AT1G27450 71.7 7.9e-72 267.7
Sed01g4012 . 7 180 PRT Gene Family AT1G27450 74.7 6.7e-71 264.6
Sed04g0771 . 4 177 PRT Gene Family AT1G27450 71.8 1.3e-69 260.4
Sed03g1619 . 11 183 PRT Gene Family AT1G27450 68.8 3.8e-66 248.8
Sed01g1379 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g1380 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g4013 . 7 143 PRT Gene Family AT1G27450 57.5 2.7e-48 189.5
Sed01g4014 . 13 130 PRT Gene Family AT1G27450 75.4 1.1e-46 184.1
Sed01g0252 . 63 549 PRT Gene Family AT2G16570 84.0 3.2e-241 832.0
Sed05g3558 . 68 554 PRT Gene Family AT2G16570 82.6 1.4e-236 816.6
Sed09g0518 . 66 523 PRT Gene Family AT2G16570 76.9 2.2e-205 713.0
Sed01g0252 . 55 549 PRT Gene Family AT4G34740 83.7 7.6e-243 837.4
Sed05g3558 . 24 554 PRT Gene Family AT4G34740 78.4 4.0e-236 815.1
Sed09g0518 . 55 523 PRT Gene Family AT4G34740 76.8 1.8e-207 719.9
Sed05g3558 . 1 527 PRT Gene Family AT4G38880 67.9 7.1e-198 688.0
Sed01g0252 . 6 522 PRT Gene Family AT4G38880 67.4 3.9e-196 682.2
Sed09g0518 . 70 520 PRT Gene Family AT4G38880 70.2 1.1e-177 620.9
Sed10g1206 . 69 249 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed10g1207 . 25 205 PRT Gene Family AT1G27450 81.2 1.8e-79 293.1
Sed05g0981 . 1 180 PRT Gene Family AT1G27450 71.7 7.9e-72 267.7
Sed01g4012 . 7 180 PRT Gene Family AT1G27450 74.7 6.7e-71 264.6
Sed04g0771 . 4 177 PRT Gene Family AT1G27450 71.8 1.3e-69 260.4
Sed03g1619 . 11 183 PRT Gene Family AT1G27450 68.8 3.8e-66 248.8
Sed01g1379 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g1380 . 11 183 PRT Gene Family AT1G27450 68.8 4.2e-65 245.4
Sed01g4013 . 7 143 PRT Gene Family AT1G27450 57.5 2.7e-48 189.5
Sed01g4014 . 13 130 PRT Gene Family AT1G27450 75.4 1.1e-46 184.1
Sed01g1379 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed01g1380 . 33 188 PRT Gene Family AT1G80050 78.2 7.4e-66 247.7
Sed03g1619 . 33 189 PRT Gene Family AT1G80050 78.3 9.6e-66 247.3
Sed05g0981 . 30 180 PRT Gene Family AT1G80050 76.2 2.9e-62 235.7
Sed01g4012 . 30 180 PRT Gene Family AT1G80050 76.8 1.4e-61 233.4
Sed04g0771 . 27 177 PRT Gene Family AT1G80050 74.8 2.5e-61 232.6
Sed10g1206 . 98 247 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed10g1207 . 54 203 PRT Gene Family AT1G80050 69.3 1.3e-54 210.3
Sed01g4014 . 13 130 PRT Gene Family AT1G80050 77.1 7.7e-47 184.5
Sed01g4013 . 28 143 PRT Gene Family AT1G80050 77.6 2.9e-46 182.6
Sed05g0981 . 6 97 PRT Gene Family AT4G22570 84.8 2.0e-43 172.6
Sed01g4012 . 6 97 PRT Gene Family AT4G22570 85.9 4.4e-43 171.4
Sed04g0771 . 1 94 PRT Gene Family AT4G22570 82.7 8.4e-42 167.2
Sed10g1206 . 73 164 PRT Gene Family AT4G22570 82.6 1.3e-39 159.8
Sed10g1207 . 29 120 PRT Gene Family AT4G22570 82.6 1.3e-39 159.8
Sed03g1619 . 11 100 PRT Gene Family AT4G22570 78.9 3.6e-37 151.8
Sed05g0981 . 1 96 PRT Gene Family AT4G12440 80.2 5.5e-40 161.0
Sed01g4012 . 1 96 PRT Gene Family AT4G12440 82.3 5.5e-40 161.0
Sed04g0771 . 5 93 PRT Gene Family AT4G12440 84.3 3.0e-38 155.2
Sed10g1206 . 69 164 PRT Gene Family AT4G12440 79.2 1.9e-37 152.5
Sed10g1207 . 25 120 PRT Gene Family AT4G12440 79.2 1.9e-37 152.5
Sed03g1619 . 4 99 PRT Gene Family AT4G12440 78.1 5.7e-37 151.0
Sed03g1619 . 1 148 PRT Gene Family AT5G11160 81.1 3.2e-64 242.3
Sed01g1379 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g1380 . 1 148 PRT Gene Family AT5G11160 81.1 6.1e-63 238.0
Sed01g4012 . 8 145 PRT Gene Family AT5G11160 76.1 6.1e-55 211.5
Sed05g0981 . 8 145 PRT Gene Family AT5G11160 74.6 1.0e-54 210.7
Sed10g1206 . 76 213 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed10g1207 . 32 169 PRT Gene Family AT5G11160 73.2 4.0e-54 208.8
Sed04g0771 . 5 142 PRT Gene Family AT5G11160 71.7 4.8e-52 201.8
Sed11g1384 . 1 186 PRT Gene Family AT1G71750 65.5 1.4e-69 260.4
Sed11g1385 . 1 157 PRT Gene Family AT1G71750 65.2 2.5e-55 213.0
Sed07g2767 . 15 468 PRT Gene Family AT1G55810 84.6 2.9e-224 775.4
Sed04g3616 . 16 469 PRT Gene Family AT1G55810 84.2 1.2e-222 770.0
Sed08g1480 . 19 472 PRT Gene Family AT1G55810 76.3 1.8e-202 703.0
Sed05g2667 . 4 459 PRT Gene Family AT1G55810 75.1 6.8e-202 701.0
Sed06g0448 . 19 480 PRT Gene Family AT1G55810 74.7 1.5e-201 699.9
Sed05g2668 . 4 411 PRT Gene Family AT1G55810 74.8 7.6e-177 617.8
Sed07g2767 . 65 467 PRT Gene Family AT3G27440 77.2 2.4e-185 646.0
Sed04g3616 . 66 468 PRT Gene Family AT3G27440 76.7 1.3e-183 640.2
Sed08g1480 . 70 472 PRT Gene Family AT3G27440 75.2 5.2e-180 628.2
Sed06g0448 . 78 480 PRT Gene Family AT3G27440 74.2 9.9e-179 624.0
Sed05g2667 . 57 459 PRT Gene Family AT3G27440 73.9 1.1e-177 620.5
Sed05g2668 . 57 411 PRT Gene Family AT3G27440 74.1 1.7e-154 543.5
Sed06g0448 . 1 480 PRT Gene Family AT3G27190 86.7 1.4e-248 856.3
Sed08g1480 . 1 472 PRT Gene Family AT3G27190 85.1 1.1e-245 846.7
Sed05g2667 . 1 459 PRT Gene Family AT3G27190 82.8 1.6e-228 789.6
Sed07g2767 . 11 467 PRT Gene Family AT3G27190 76.2 4.7e-209 724.9
Sed04g3616 . 3 468 PRT Gene Family AT3G27190 73.9 1.2e-207 720.3
Sed05g2668 . 1 411 PRT Gene Family AT3G27190 82.3 8.1e-201 697.6
Sed14g0512 . 1 288 PRT Gene Family AT3G53900 68.0 2.2e-108 389.8
Sed14g0514 . 1 238 PRT Gene Family AT3G53900 64.3 3.0e-81 299.7
Sed14g0515 . 1 238 PRT Gene Family AT3G53900 64.3 3.0e-81 299.7
Sed14g0513 . 45 228 PRT Gene Family AT3G53900 72.3 5.3e-78 288.9
Sed07g2767 . 1 468 PRT Gene Family AT4G26510 83.6 3.0e-232 802.0
Sed04g3616 . 1 469 PRT Gene Family AT4G26510 83.7 1.9e-231 799.3
Sed08g1480 . 7 472 PRT Gene Family AT4G26510 77.3 3.3e-215 745.3
Sed06g0448 . 7 480 PRT Gene Family AT4G26510 75.9 1.2e-212 736.9
Sed05g2667 . 1 459 PRT Gene Family AT4G26510 75.7 3.5e-209 725.3
Sed05g2668 . 1 411 PRT Gene Family AT4G26510 74.8 2.8e-182 636.0
Sed06g0448 . 1 480 PRT Gene Family AT5G40870 87.2 3.6e-249 858.2
Sed08g1480 . 1 472 PRT Gene Family AT5G40870 86.1 3.4e-247 851.7
Sed05g2667 . 1 459 PRT Gene Family AT5G40870 83.7 4.0e-232 801.6
Sed07g2767 . 11 470 PRT Gene Family AT5G40870 73.6 3.4e-207 718.8
Sed04g3616 . 3 470 PRT Gene Family AT5G40870 72.3 6.5e-206 714.5
Sed05g2668 . 1 411 PRT Gene Family AT5G40870 83.5 7.1e-205 711.1