Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0524 ATGGAGTTGGATGGCATTGATGGTGTGCCATCCATGGATGTTATGGACGAGGAGGACAAAACCCTTCAACGGAACTCTCAGTTTTCTTCGATTTCTAAGCCGAGGATCAACAATGGCGATAATCCCACCACTACGAGTGTTCACGAGCTTCTTGAATGTCCTGTCTGTACTAATTCTATGTACCCTCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCCTCGTGTAAAACGAGAGTAGACAACCGTTGCCCGACGTGCAGACAAGAACTCGGCGATATCAGATGTCTAGCATTAGAAAAGATAGCCGAATCACTTAAACTGGCTTGTAAATTCTGCACATTTGGGTGCCCAGAGATATTGCCCTACTATAGTAAACTCAAACATGAATCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCTGACTGCCCTATTGATGGGGACATTCCTTTCCTTGTTTCTCATCTTCGGGACGACCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGCTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTACATGGATGCTAACTGTCTTCCACTGTTTCGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTATACATGGCATTTCTTCGATATATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGTAGGTGGGAATGGCAGGAAGCTCATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCATGACGGTCTCATTATACAACGAAACATGGCACTCTTCTTTTCGGGGGGCGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAGCAGTAA 915 46.23 MELDGIDGVPSMDVMDEEDKTLQRNSQFSSISKPRINNGDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRYMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5272622 5276982 + Sed0002073.1 Sed09g0524 725288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0524 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 96 IPR013083 -
Sed09g0524 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
Sed09g0524 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 160 IPR013083 -
Sed09g0524 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515(InterPro)
Sed09g0524 304 CDD RING-HC_SIAHs 51 89 - -
Sed09g0524 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270(InterPro)
Sed09g0524 304 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Sed09g0524 304 SUPERFAMILY TRAF domain-like 106 298 - -
Sed09g0524 304 SUPERFAMILY RING/U-box 47 93 - -
Sed09g0524 304 Pfam Sina, TRAF-like domain 197 294 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed09g0524 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 53 88 IPR049548 -
Sed09g0524 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Sed09g0524 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 296 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed09g0524 304 CDD Sina 167 295 - -
Sed09g0524 304 Pfam Sina, zinc finger 102 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0856 Sed-Chr7:6251036 Sed09g0524 Sed-Chr9:5272622 1.00E-141 dispersed
Sed09g0524 Sed-Chr9:5272622 Sed13g0065 Sed-Chr13:382241 5.40E-142 dispersed
Sed09g0524 Sed-Chr9:5272622 Sed09g0525 Sed-Chr9:5272622 3.80E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0524 K04506 - csv:101209363 632.869