Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0525 ATGTGTGTAAGTGACGATGTTAATTGTGCTCGCTTTAAGTTTGTACAGACAAAAGGTCTCTTTTTTGCTTGTTTGATGTTAGTTGATGCGGGACTTAGTCGAGCCTTTTCATCTTATATGGTATTTAATAAGTGTCCCAATGGACATACCCTCTGTTCCTCGTGTAAAACGAGAGTAGACAACCGTTGCCCGACGTGCAGACAAGAACTCGGCGATATCAGATGTCTAGCATTAGAAAAGATAGCCGAATCACTTAAACTGGCTTGTAAATTCTGCACATTTGGGTGCCCAGAGATATTGCCCTACTATAGTAAACTCAAACATGAATCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCTGACTGCCCTATTGATGGGGACATTCCTTTCCTTGTTTCTCATCTTCGGGACGACCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGCTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTACATGGATGCTAACTGTCTTCCACTGTTTCGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTATACATGGCATTTCTTCGATATATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGTAGGTGGGAATGGCAGGAAGCTCATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCATGACGGTCTCATTATACAACGAAACATGGCACTCTTCTTTTCGGGGGGCGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAGCAGTAA 849 44.76 MCVSDDVNCARFKFVQTKGLFFACLMLVDAGLSRAFSSYMVFNKCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRYMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5272622 5276982 + Sed0002073.2 Sed09g0525 725289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0525 282 Pfam Sina, TRAF-like domain 175 272 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed09g0525 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 118 IPR013083 -
Sed09g0525 282 Gene3D Classic Zinc Finger 119 141 - -
Sed09g0525 282 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 142 272 IPR008974 GO:0005515(InterPro)
Sed09g0525 282 FunFam E3 ubiquitin-protein ligase SINAT5-like 140 272 - -
Sed09g0525 282 Pfam Sina, zinc finger 80 155 - -
Sed09g0525 282 CDD Sina 145 273 - -
Sed09g0525 282 SUPERFAMILY TRAF domain-like 84 276 - -
Sed09g0525 282 FunFam E3 ubiquitin-protein ligase SINAT3 81 139 - -
Sed09g0525 282 ProSiteProfiles Zinc finger SIAH-type profile. 84 144 IPR013010 GO:0008270(InterPro)
Sed09g0525 282 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 44 274 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0525 Sed-Chr9:5272622 Sed13g0065 Sed-Chr13:382241 1.00E-126 dispersed
Sed09g0524 Sed-Chr9:5272622 Sed09g0525 Sed-Chr9:5272622 3.80E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0525 K04506 - csv:101209363 508.834