Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0525 | ATGTGTGTAAGTGACGATGTTAATTGTGCTCGCTTTAAGTTTGTACAGACAAAAGGTCTCTTTTTTGCTTGTTTGATGTTAGTTGATGCGGGACTTAGTCGAGCCTTTTCATCTTATATGGTATTTAATAAGTGTCCCAATGGACATACCCTCTGTTCCTCGTGTAAAACGAGAGTAGACAACCGTTGCCCGACGTGCAGACAAGAACTCGGCGATATCAGATGTCTAGCATTAGAAAAGATAGCCGAATCACTTAAACTGGCTTGTAAATTCTGCACATTTGGGTGCCCAGAGATATTGCCCTACTATAGTAAACTCAAACATGAATCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCTGACTGCCCTATTGATGGGGACATTCCTTTCCTTGTTTCTCATCTTCGGGACGACCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGCTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTACATGGATGCTAACTGTCTTCCACTGTTTCGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTATACATGGCATTTCTTCGATATATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGTAGGTGGGAATGGCAGGAAGCTCATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCATGACGGTCTCATTATACAACGAAACATGGCACTCTTCTTTTCGGGGGGCGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAGCAGTAA | 849 | 44.76 | MCVSDDVNCARFKFVQTKGLFFACLMLVDAGLSRAFSSYMVFNKCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRYMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5272622 | 5276982 | + | Sed0002073.2 | Sed09g0525 | 725289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0525 | 282 | Pfam | Sina, TRAF-like domain | 175 | 272 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Sed09g0525 | 282 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 118 | IPR013083 | - | |
Sed09g0525 | 282 | Gene3D | Classic Zinc Finger | 119 | 141 | - | - | |
Sed09g0525 | 282 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 142 | 272 | IPR008974 | GO:0005515(InterPro) | |
Sed09g0525 | 282 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 140 | 272 | - | - | |
Sed09g0525 | 282 | Pfam | Sina, zinc finger | 80 | 155 | - | - | |
Sed09g0525 | 282 | CDD | Sina | 145 | 273 | - | - | |
Sed09g0525 | 282 | SUPERFAMILY | TRAF domain-like | 84 | 276 | - | - | |
Sed09g0525 | 282 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 81 | 139 | - | - | |
Sed09g0525 | 282 | ProSiteProfiles | Zinc finger SIAH-type profile. | 84 | 144 | IPR013010 | GO:0008270(InterPro) | |
Sed09g0525 | 282 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 44 | 274 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g0525 | Sed-Chr9:5272622 | Sed13g0065 | Sed-Chr13:382241 | 1.00E-126 | dispersed | |
Sed09g0524 | Sed-Chr9:5272622 | Sed09g0525 | Sed-Chr9:5272622 | 3.80E-148 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0525 | K04506 | - | csv:101209363 | 508.834 |