Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0530 ATGGGTGAGTCTTGGAAAGGTTTGGAAAGTGAGGATCTGTATGAGGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTTGATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCATATGGAACAATTGGAAGAGTCAACAAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTTCCTTCCAAGATCCTCTGTCGTGTTGTGAACGTTCGTTTGTTGGCTGAAAAGGAAACTGATGAGGTTTATGCTCAAATCACTTTACACCCAGAAGCTGATCAAAATGAGCCACAAAGCCCTGATCCAGAGCAGCCAGAGCATACAAAACAAACTGTTCATTCATTTTGTAAGATTTTGACTGCTTCTGATACCAGCACTCATGGAGGTTTTTCAGTTCTTAGAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAAGCCACCCCAACTCAGGAGTTAGCTGCCAAGGATCTTCATGGGCATGAATGGAAATTTAAGCATATTTTTAGAGGTCAACCGCGGAGGCATTTGCTAACTACTGGGTGGAGTACGTTCGTTACATCGAAACGACTCGTTGCCGGGGATGCCTTTGTTTTCTTGAGGGGCCAAAATGGGGAACTGAGGGTTGGGGTTCGACGACAGACTCGGCAGCTGAGTTCCATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTCGCCACTGCTTCTCATGCTGTTCGTACGCAGACCTTTTTCGTTGTGTATTACAAGCCGAGAACTAGCCAATTCATCATCAGCTTAAACAAGTACATGGAAACCGTTAAAAACGGTTTTGAGGTTGGGATGCGCTTCAAGATGAGATTTGAAGGAGATGAATCACCAGAGAGAAGGTTCACTGGTACTGTTGTTGGTGTTGGAGATTTATCTTCGCAATGGTCGGATTCGAAATGGCGATCGCTCAAGGTTCAATGGGATGAACCTGCTGCGATTCAGAGGCCCGAACGAGTTTCTCCATGGGAGATTGAGCCATTTGTACCTTCTGCCTCCTTAAACTTTACTCATCCCTGCGGAAAGAGTAAGAGGTCCCGGCCGGTTGAGGTTCCTCCTCCTGAAATTTCTTCTAATTCAACCCCTTCGGGCTTTTGGCTTCACGGATCGACAATTACTCACGAGAAACCCCAACTAAATGGTGCAAATGAAGTTCAAAGCAGCGATAAACAGGTTGTCTGGGCTCTTGGGCAGCAAAAACTCGATGGCAATGCCGATACCAATCAAAGCCACTGTAATCCAATGGCACATGTAATTTGGCCTTCCCAAAAGCTATACCCAGACTTAACATGTGGAAGAGAACTTGTTCAGAAACAGCCTCTTCCGTCTCCTAGCAGTGACCTCATTCGAAATGATCAACTGGAGCAAAGGAATAAACCCGACATTTCTCTCGGCTGTCGAATATTCGGAATCGATTTAAAAAATAACTCTAGCATTGCCGCTTCCTTGGAGAAGAAACCTTGCTGCCCAACAACAGCAGCCAACGGTGCACAAGATCCAGTAGCTGCAGCTGCTGCGACGACTCTAGCCGAGGCTGGAAACCTCTCACAGCCTTCAAAGGACCAGCCACCAGTCGGTTTGGAGCTGTCGACGAAGGGAATGCAGACGAAGCACCTTTCCAATCAATCCTCAAGAACCCGTAGAAAGGTACAAATGCAAGGAGTTGCTGTAGGCCGAGCGGTCGACTTGACGACACTTGAAGGGTATGAAGATCTGACAGACGAGCTGGAGAACGTATTCGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCCATCGTTTTCACTGACGATGAAAATGACATGATGCTCGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGTGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGTAAAAGAAAGCTTGTTTCTCCATCATCCTTGGATTCAGAGGGCAAAACTGAATCTTAA 2013 46.05 MGESWKGLESEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPSKILCRVVNVRLLAEKETDEVYAQITLHPEADQNEPQSPDPEQPEHTKQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQATPTQELAAKDLHGHEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGQNGELRVGVRRQTRQLSSMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIISLNKYMETVKNGFEVGMRFKMRFEGDESPERRFTGTVVGVGDLSSQWSDSKWRSLKVQWDEPAAIQRPERVSPWEIEPFVPSASLNFTHPCGKSKRSRPVEVPPPEISSNSTPSGFWLHGSTITHEKPQLNGANEVQSSDKQVVWALGQQKLDGNADTNQSHCNPMAHVIWPSQKLYPDLTCGRELVQKQPLPSPSSDLIRNDQLEQRNKPDISLGCRIFGIDLKNNSSIAASLEKKPCCPTTAANGAQDPVAAAAATTLAEAGNLSQPSKDQPPVGLELSTKGMQTKHLSNQSSRTRRKVQMQGVAVGRAVDLTTLEGYEDLTDELENVFEIKGELREMNKWSIVFTDDENDMMLVGDDPWPEFCKMVKRIFIYSSEEVKKMSSKRKLVSPSSLDSEGKTES 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5366658 5371028 + Sed0017697.1 Sed09g0530 725294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0530 670 FunFam Auxin response factor 558 651 - -
Sed09g0530 670 SUPERFAMILY DNA-binding pseudobarrel domain 109 247 IPR015300 -
Sed09g0530 670 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677(InterPro)
Sed09g0530 670 SMART B3_2 118 220 IPR003340 GO:0003677(InterPro)
Sed09g0530 670 FunFam Auxin response factor 279 350 - -
Sed09g0530 670 MobiDBLite consensus disorder prediction 357 381 - -
Sed09g0530 670 ProSiteProfiles PB1 domain profile. 563 655 IPR053793 -
Sed09g0530 670 MobiDBLite consensus disorder prediction 654 670 - -
Sed09g0530 670 Pfam AUX/IAA family 560 648 IPR033389 -
Sed09g0530 670 CDD B3_DNA 116 218 IPR003340 GO:0003677(InterPro)
Sed09g0530 670 Gene3D - 280 351 - -
Sed09g0530 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 653 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed09g0530 670 MobiDBLite consensus disorder prediction 93 114 - -
Sed09g0530 670 SUPERFAMILY CAD & PB1 domains 559 639 - -
Sed09g0530 670 MobiDBLite consensus disorder prediction 650 670 - -
Sed09g0530 670 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677(InterPro)
Sed09g0530 670 Gene3D - 115 220 IPR015300 -
Sed09g0530 670 Pfam Auxin response factor 244 323 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed09g0530 670 FunFam Auxin response factor 116 220 - -
Sed09g0530 670 Gene3D - 558 651 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3807 Sed-Chr1:67230083 Sed09g0530 Sed-Chr9:5366658 4.80E-191 dispersed
Sed02g0014 Sed-Chr2:3651767 Sed09g0530 Sed-Chr9:5366658 2.90E-178 dispersed
Sed07g0958 Sed-Chr7:7006966 Sed09g0530 Sed-Chr9:5366658 3.20E-198 dispersed
Sed09g0530 Sed-Chr9:5366658 Sed11g1995 Sed-Chr11:34122701 1.10E-152 dispersed
Sed09g0530 Sed-Chr9:5366658 Sed13g0775 Sed-Chr13:5620801 1.60E-207 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39533 PF02362 B3 8.30E-22 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0530 K14486 - csv:101205805 1088.17