Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0555 ATGACTACAAACTCTCACCATTCTCCACCCACAACCACCACCACCGCCACCGCCACCACTTCCTCGGCCTCTTCCGGCGAAAATAGCCGAAAGAGGCCGAGGAGTACGACGACGAGCACGACAACGAGCAATACAGAGAGCGAGAGCGAATCAACTCACTCGACAACAAAGTACAGAGGGGTTCGCCTAAGGGCGTGGGGAAAATGGGTGTCAGAGATACGAGAGCCGAGGAAGAAATCGAGGATATGGCTCGGCACATACCCGACCGCAGAGATGGCAGCGCGTGCACACGACGTGGCTGCGCTTGCCATCAAAGGGCGCAACGCATTCCTCAATTTCCCCGAACTCAAGCACCAACTCCCCAGCCCCGTCTCCCTCTCCGCTAAGGATATCCAAGCGGCGGCGGCAGAGGCAGCCGCCGTGAAACCACCGATGGCGGAGGAGGACGAGGAATTGAGCCATTCGGAAACGACGTCGTTTTACGAGGAGACATGGTTTGATTTACCAGATCTTGTAATAGGAGGGAGTGATGGGAAGTTGTTGGGTTATGAATTGCCATGGCAATTTGGTGAAGACCAAGAACACTCATGGCAATGGGACTGTTATTCTCATAGTACTACTTTTCCTAGTTGA 633 54.19 MTTNSHHSPPTTTTTATATTSSASSGENSRKRPRSTTTSTTTSNTESESESTHSTTKYRGVRLRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGRNAFLNFPELKHQLPSPVSLSAKDIQAAAAEAAAVKPPMAEEDEELSHSETTSFYEETWFDLPDLVIGGSDGKLLGYELPWQFGEDQEHSWQWDCYSHSTTFPS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5829747 5830530 - Sed0016035.1 Sed09g0555 725319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0555 210 MobiDBLite consensus disorder prediction 1 58 - -
Sed09g0555 210 Pfam AP2 domain 56 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0555 210 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0555 210 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0555 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 156 IPR051032 -
Sed09g0555 210 SMART rav1_2 57 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0555 210 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0555 210 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677(InterPro)
Sed09g0555 210 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Sed09g0555 210 CDD AP2 56 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0555 210 MobiDBLite consensus disorder prediction 1 51 - -
Sed09g0555 210 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1805 Sed-Chr2:52595716 Sed09g0555 Sed-Chr9:5829747 2.60E-35 dispersed
Sed09g0555 Sed-Chr9:5829747 Sed12g1396 Sed-Chr12:11439726 5.90E-31 dispersed
Sed09g0555 Sed-Chr9:5829747 Sed03g1479 Sed-Chr3:9448969 7.70E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39536 PF00847 AP2 1.80E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0555 - - - 0.0