Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0569 ATGGAATTTTTCAACAAATCTAAAGAAGAAGATGAGGAGGAGGAGGAGGAGGAAGAAAACCCTAATCTTGTTTGTGATTTTTTCCTAAATTCCAATTCCCAAAACCACCAACAATGGCTTGAACAAGCTCCAAATCAAAATCAGTTCCAAAATCAGCAGCCTCTCATGGACTTGTCCCTTAGGATGGACTCTAACAACAATGGGGTTGTGGTCGAGAGAGAGCACATGTTCGATAAAGTCGTGACGCCGAGCGATGTGGGGAAATTGAACCGTCTTGTGATCCCGAAGCAACATGCTGAAAAATACTTCCCTTTGGACTCGACCGCGAACGAGAAAGGCCTCATCTTGAACTTCGAGGACCGCAACGGGAAGCCCTGGCGCTTCCGTTACTCGTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAAGGCTGGAGCAGGTTCGTCAAAGACAAGAAATTGGATGCAGGTGACGTCGTTTCGTTCCACCGTGGGGTCGGCGATTCTGCCAAGGATCGCCTTTTCATCGACTGGTGTCGTCGCCGTCCCGACATCCCTCGCCCTCACCCTCTCCTCCTCCTCCCGCAGTCTCTTCGATGGGCTTCTGGTCGCCACTTTACTCCACTCCCTCCTCCGCTGCTGCAGCCAATACGAAGCCATAACCATCTTGGTAATTACTCGAATCTCTATCCCAATTACGCCTTTGAAATGTCGAATTTTCGATCCTCGATTTCTTCTTCTTCGTCCCCCTCGCTCTATAGGATGGGGAATGGGGTTGTTGTTAATAATGAAGGCTCTTCAATGGAGATTAACAAAGCCGGTTCGGGCAGTGCTACAGCGGCGAAACGACTCCGATTGTTCGGAGTGAATATGGAGTGTGCTACAACGGATGGAAATCAACGAGGAGAAGACGATCTATCGAACGACGGCGTTTCGAGGAGAGGGAAACAGCCCTTGTCGTTGAATTGGGATTTACTTTAG 981 49.44 MEFFNKSKEEDEEEEEEEENPNLVCDFFLNSNSQNHQQWLEQAPNQNQFQNQQPLMDLSLRMDSNNNGVVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTANEKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDSAKDRLFIDWCRRRPDIPRPHPLLLLPQSLRWASGRHFTPLPPPLLQPIRSHNHLGNYSNLYPNYAFEMSNFRSSISSSSSPSLYRMGNGVVVNNEGSSMEINKAGSGSATAAKRLRLFGVNMECATTDGNQRGEDDLSNDGVSRRGKQPLSLNWDLL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6384244 6385548 - Sed0023431.1 Sed09g0569 725333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0569 326 Pfam B3 DNA binding domain 77 181 IPR003340 GO:0003677(InterPro)
Sed09g0569 326 Gene3D - 70 185 IPR015300 -
Sed09g0569 326 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 291 IPR044800 GO:0003700(InterPro)
Sed09g0569 326 CDD B3_DNA 75 164 IPR003340 GO:0003677(InterPro)
Sed09g0569 326 MobiDBLite consensus disorder prediction 295 315 - -
Sed09g0569 326 MobiDBLite consensus disorder prediction 1 20 - -
Sed09g0569 326 SUPERFAMILY DNA-binding pseudobarrel domain 74 180 IPR015300 -
Sed09g0569 326 SMART B3_2 77 182 IPR003340 GO:0003677(InterPro)
Sed09g0569 326 ProSiteProfiles B3 DNA-binding domain profile. 77 182 IPR003340 GO:0003677(InterPro)
Sed09g0569 326 FunFam B3 domain-containing protein 70 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2276 Sed-Chr4:36503785 Sed09g0569 Sed-Chr9:6384244 4.30E-70 dispersed
Sed05g0642 Sed-Chr5:4701270 Sed09g0569 Sed-Chr9:6384244 9.60E-55 dispersed
Sed09g0569 Sed-Chr9:6384244 Sed13g0860 Sed-Chr13:6369344 2.70E-59 dispersed
Sed09g0569 Sed-Chr9:6384244 Sed07g1608 Sed-Chr7:13190640 1.70E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39538 PF02362 B3 8.40E-30 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0569 K09287 - csv:101221141 359.377