Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g0579 | ATGTCTTTGAGTAGTGAAATTGAAAGCCTTTGGGTTTTTGCTTTGGCTTCTAAATACTCCGCTCTCACCCAACAAAACATCCTTTACTCCTTACTCTTTCTTTTCCTTCTTTCCTTTCTCCTTTCCATTTTCTATTGGGCCCATCCCGGTGGCCCTGCTTGGGGCCGTCATTGCCGCCACCATCACCACCACCGCAGTTCCTGTATCCCGGGCCCTAGAGGCCTCCCCGTCATAGGAAGCATGACTCTTATGACGGGGCTAGCCCACCAACGAATTGCGGCCATGGCCAAATCCCTGCGCGCCACCCGGCTCATGGCCTTCTCACTTGCCAACACTCGCGTCATCGTCACATGCAACCCCGTTGTAGCGAAAGAGATTCTTAACAGCTCGGTTTTCGCGGACCGACCGATCAAGGAATCGGCTTACTCGTTGATGTTCAACCGTGCCATTGGGTTCGCCCCTTACGATGTCTATTGGCGGACCCTTCGACGAATCGCGTCACAACACCTCTTCTGCCCCAAACAAATCAAATCCTCCGAGTTTCAACGTAGTCGAATCGCTTCCCAAATGGTTGCAATGTTCTCGAATATGACATCATCTTGCCGAGTTCGTGACATGCTCAAACGAGCCTCTTTGAACCACATGATGGGCTCGGTCTTCGGGCGGTTCTACGACCTCTCGGACTCGAACGAGGAAGTTGAGCAACTCAAGAACCTTGTGGATGAAGGCTATGATTTGTTGGGCCTTCTCAACTGGTCTGACCATCTCCCTTTCTTAGCTGATTTCGACTTTCAAAGAATCCGGTTCAGATGCTCACGGTTGGTCCCCAAAGTGAACCGGTTCGTCTCCCGCATCATTGCGGACCACCGGTCCAAATCAACCGACAAAATCATGGATTTTGTTGATGTTCTTCTCTCTCTTCAAGAAACTGACAAACTCTCTCATTCTGATATGATCGCCGTTCTTTGGGAAATGATATTTAGAGGGACAGACACAGTGGCAGTTTTGATGGAGTGGATTCTAGCAAGAATGGTCGTTCATAAAAACGAGCAAGAAAAAGTGCAAGAAGAGCTGAACAGGGTCGTCGGTGCGTCACGCGCCGTCGTGGAATCCGACGTTCCGTCGTTGGTTTACCTAACCGCGGTGGTTAAGGAAGTCCTCAGGTTGCACCCGCCGGGCCCGCTTCTGTCGTGGGCCCGCCTCGCCACCCGCGACACGATCGTGGATGGGCACCACGTGCCTCGTGGGACCACCGCTATGGTCAACATGTGGTCCATAGCGCGGGACCCACGGGTGTGGTCGAACCCTCTCGAGTTTGTGCCCGAGAGGTTCGTGCCCGGTTCGAGTGGCGGTGTGGACGTGGAGTTTTCGGTTATGGGTTCGGATCTACGGTTGGCTCCGTTCGGGTCGGGGCGGAGGACTTGCCCCGGGAAGGCTTTGGCTTGGACAACGGTCGTCTTTTGGGTGGCTACGCTTTTACATGAGTTTAAATGGATGCCTTCAACTGACCAAAATAATGCTGTTGATTTCTCAGAAAATCTTAAGCTCTCTTGTGAGATGGCAAATCCACTCACCGTTAAATTATGCCCCAGGCATTAA | 1599 | 52.22 | MSLSSEIESLWVFALASKYSALTQQNILYSLLFLFLLSFLLSIFYWAHPGGPAWGRHCRHHHHHRSSCIPGPRGLPVIGSMTLMTGLAHQRIAAMAKSLRATRLMAFSLANTRVIVTCNPVVAKEILNSSVFADRPIKESAYSLMFNRAIGFAPYDVYWRTLRRIASQHLFCPKQIKSSEFQRSRIASQMVAMFSNMTSSCRVRDMLKRASLNHMMGSVFGRFYDLSDSNEEVEQLKNLVDEGYDLLGLLNWSDHLPFLADFDFQRIRFRCSRLVPKVNRFVSRIIADHRSKSTDKIMDFVDVLLSLQETDKLSHSDMIAVLWEMIFRGTDTVAVLMEWILARMVVHKNEQEKVQEELNRVVGASRAVVESDVPSLVYLTAVVKEVLRLHPPGPLLSWARLATRDTIVDGHHVPRGTTAMVNMWSIARDPRVWSNPLEFVPERFVPGSSGGVDVEFSVMGSDLRLAPFGSGRRTCPGKALAWTTVVFWVATLLHEFKWMPSTDQNNAVDFSENLKLSCEMANPLTVKLCPRH | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 6589623 | 6591947 | - | Sed0015839.1 | Sed09g0579 | 725343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g0579 | 532 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | E-class P450 group I signature | 380 | 398 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | E-class P450 group I signature | 465 | 475 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | E-class P450 group I signature | 210 | 228 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | E-class P450 group I signature | 475 | 498 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | P450 superfamily signature | 475 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | P450 superfamily signature | 381 | 392 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PRINTS | P450 superfamily signature | 466 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | FunFam | Cytochrome P450 78A5 | 61 | 531 | - | - | |
| Sed09g0579 | 532 | Gene3D | Cytochrome P450 | 55 | 528 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | Pfam | Cytochrome P450 | 70 | 505 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | PANTHER | CYTOCHROME P450 78A7-RELATED | 5 | 527 | IPR051996 | - | |
| Sed09g0579 | 532 | SUPERFAMILY | Cytochrome P450 | 69 | 531 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0579 | 532 | CDD | CYP78 | 100 | 524 | - | - | |
| Sed09g0579 | 532 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 468 | 477 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2295 | Sed-Chr4:36627529 | Sed09g0579 | Sed-Chr9:6589623 | 1.50E-248 | dispersed | |
| Sed05g3831 | Sed-Chr5:45918827 | Sed09g0579 | Sed-Chr9:6589623 | 3.60E-130 | dispersed | |
| Sed08g2131 | Sed-Chr8:35279533 | Sed09g0579 | Sed-Chr9:6589623 | 1.00E-135 | dispersed | |
| Sed09g0579 | Sed-Chr9:6589623 | Sed08g0264 | Sed-Chr8:1559361 | 3.50E-64 | dispersed | |
| Sed09g0579 | Sed-Chr9:6589623 | Sed01g2286 | Sed-Chr1:17299618 | 7.70E-136 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g0579 | K20619 | - | csv:101216159 | 828.935 |