Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0594 ATGGTGGACAAAAATTACAAGCCCACCGGCGGCGATCGGAAAACGCGAGTGGGAAATTACGATTTGGGACAAACCCTTGGGAAGGGCAATTTCGGAAAGGTCATTTTGGCTACCAATTTTGAAACCCAACAAGCTTTTGCTCTCAAGGTCCTTGATAAGACCAAGTTCATCAACCCCAATATCACTCATCAGATTAAAAGGGAAATAAGCACCCTCAAGCTTCTCAACCATCCAAATGTTGTCACGCTACACGAGGTGTTGGCGAGCAAAAGCAAAATTTACATGGTTCTTGAGTACGTTAACGGCGGAGAATTGTTTGACAGAATCGCATCGAAAGGGAAGCTAACAGAAGACCAAGGTAGAAAAATATTCCAGCAGTTAATTGACGGCGTGAGTTACTGCCATAGCAAAGGCGTTTTCCATAGGGATCTTAAGCTGGAGAACATACTCATTGATGAGAAAGGAAATATTAAGATATCAGACTTTGGGTTAAGTGCATTACCAGACCATTTTAGGGATGACGGTTTGCTTCATACAACGTGTGGAAGCCCGAACTACGTGGCACCTGAGATTTTGGTTAACAGAGGATATAACGGTGCTGCCTCCGACATATGGTCATGTGGTGTTATCTTGTTCGTAATTCTCACCGGATCGCTTCCTTTTGATGATAGAAATTTGTCTGTCCTTTACCATAAGATCCTTAAAGGAGAAACTCAGGTACCAAAGTGGGTGTCACAAGGAGCACAAAACTTAATGAGAAGGATTCTTGATCCCAACCCTAAATCTAGGATAAGTGTGGAAGATATCAAAATGGACAAGTGGTTTAGAAAGGACTACCAACCAACACCCTACCTTCATGATCATGAGGAAGATGATATACACACTTATTCTCAAGGTCTCCCCATCTCAATGCATCAAGTGACATCTTATCTTGAGGAAAAGAGTTCAACTATAAATGCTTTTCAACTGATTGGAATGTCATCATGCCTTGACCTTTCTGGTTTCTTTGAGAAAGAGGATGTATCTGAGAGGAAGATCAGATTTGCGACCAATCACTACTCTGCAAAAGAAGATGTTCTCAAGCGGATGGAGGATCTTGTAACAGAGATGGGGTTTCTTGTCCAGAGGAAACATGCAAAGTTGAAAATAATGCGAGAGCACAAGGCTCAAAATGGTGTGCCCAACAGCATACTTTGGGTATCAGCAGAGGTGTTTGAGATAAGTCCATCGCTATATGTTGTAGAATTAAGAAAGCTGCAAGGAGATTCATCTTCATATAGACAGATGTGTAAAATATTATCAAATGGGGTATCCCCACGAGGCGAGACTCCATGA 1335 42.02 MVDKNYKPTGGDRKTRVGNYDLGQTLGKGNFGKVILATNFETQQAFALKVLDKTKFINPNITHQIKREISTLKLLNHPNVVTLHEVLASKSKIYMVLEYVNGGELFDRIASKGKLTEDQGRKIFQQLIDGVSYCHSKGVFHRDLKLENILIDEKGNIKISDFGLSALPDHFRDDGLLHTTCGSPNYVAPEILVNRGYNGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGETQVPKWVSQGAQNLMRRILDPNPKSRISVEDIKMDKWFRKDYQPTPYLHDHEEDDIHTYSQGLPISMHQVTSYLEEKSSTINAFQLIGMSSCLDLSGFFEKEDVSERKIRFATNHYSAKEDVLKRMEDLVTEMGFLVQRKHAKLKIMREHKAQNGVPNSILWVSAEVFEISPSLYVVELRKLQGDSSSYRQMCKILSNGVSPRGETP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6738672 6751203 + Sed0002187.1 Sed09g0594 725358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0594 444 Pfam NAF domain 316 375 IPR004041 GO:0007165(InterPro)
Sed09g0594 444 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0594 444 FunFam Non-specific serine/threonine protein kinase 315 440 - -
Sed09g0594 444 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Sed09g0594 444 Gene3D Transferase(Phosphotransferase) domain 1 102 298 - -
Sed09g0594 444 SMART serkin_6 20 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0594 444 Gene3D Kinase associated domain 1, KA1 312 439 - -
Sed09g0594 444 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165(InterPro)
Sed09g0594 444 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0594 444 FunFam Non-specific serine/threonine protein kinase 13 315 - -
Sed09g0594 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 427 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed09g0594 444 CDD CIPK_C 319 431 - -
Sed09g0594 444 Gene3D Phosphorylase Kinase; domain 1 7 101 - -
Sed09g0594 444 SUPERFAMILY Protein kinase-like (PK-like) 17 318 IPR011009 -
Sed09g0594 444 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Sed09g0594 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0594 Sed-Chr9:6738672 Sed12g0727 Sed-Chr12:4347372 2.50E-148 dispersed
Sed09g0594 Sed-Chr9:6738672 Sed02g1101 Sed-Chr2:48340440 2.30E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79751 PF00069 Pkinase 1.80E-73 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0594 K07198 - csv:101206030 634.024