Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0596 ATGGCCCCTGATCTACACACAACACTTTCCAAGAAGACGTTTGTTTTCGGTATGAAGGTGTGGGTGTTTACTGGAATCCTAGTGGGGGTGTTCATTGTAGTAGTCCTCGTGGTGCTATCGATATGCGTTACTTTACGAAGAAAGTCTAGAAGGATCAATGGCATGCTTCCTATCAGCCGTATTCCTACTGCATCTAAGGAAATCAAGGAGATAGGAGTGGATCATGTTTCACCGATCCAGCACGGCACCCACCCCCACGACGACACGGAGTCGGAAAAGGTTCTTCTATATTCGAATAAGGCATATGATTACAGCATAACGAGCTCGGTTGATCATACAGAGATCTATGCCATTGGTTCTGGAGAAGGAAGCAAAGAAGCTAGTGCTTTGCATAGACCCTCGGATTCTGTACCGGACAATTCGCCACTGGCTGGTCTGCCGGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGAATTTTTCAAATGATAATATAATTGGGGAGGGAGGATATGGACTTGTTTATCGAGGTCAACTAATCAATGGCACACCTGTGGCTGTCAAAAAGCTTCTAAATCTGGGACAAGCGGAAACAGAATTCAGAGTGGAAGTAGAAGCGTTTGGGCACGTGCGGCATAAGAACTTAGTTCGGCTGCTAGGGTACTGCATTGAAGGAACACACAGGATTCTAGTATATGAGTACGTAGACAATGGAAATCTAGAACAATGGCTTCATGGAGATCTACGTCAACATGGATATCTCACTTGGGAAGCACGAATCAGAATTCTCCTTGGTACTGCTAAGGCGTTGGCATATTTGCACGAGGCAATTGAACCAAAAATTGTGCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAACTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGTCATATAAACACCAGAGTTATGGGTACGTTTGGATATGTGGCACCTGAGTACGCCAAATCTGGACTTCTAAATGAAAAGAGCGATGTTTATAGCTTTGGAGTGGTCCTTCTTGAAGCAATTACTGGAAGAGACCCGGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGAAGCAAACGTTCAGAAGAAGTGGTAGACCCAGATATAGAGCGAAAACCCTCAGTTAGTGAACTGAAACGAGCTCTTTTAACTGCTTTAAGGTGTGTGGATCCAGATTCTGATAAGAGGCCAAGGATGAGCCAAGTTGCCCGAATGCTCGAGTCCGAGGAATATCCAGTTCCTCGACAGGATCGGAGACCGAAAAAGGGCCAAGCTCATTCAACCAAAATGGAGGCTGAGAAACAGAAAAGAGGACCTAGACGACACAGATAA 1434 44.98 MAPDLHTTLSKKTFVFGMKVWVFTGILVGVFIVVVLVVLSICVTLRRKSRRINGMLPISRIPTASKEIKEIGVDHVSPIQHGTHPHDDTESEKVLLYSNKAYDYSITSSVDHTEIYAIGSGEGSKEASALHRPSDSVPDNSPLAGLPEFSQLGWGHWFTLRDLELATMNFSNDNIIGEGGYGLVYRGQLINGTPVAVKKLLNLGQAETEFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGDLRQHGYLTWEARIRILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHINTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPDIERKPSVSELKRALLTALRCVDPDSDKRPRMSQVARMLESEEYPVPRQDRRPKKGQAHSTKMEAEKQKRGPRRHR 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6784440 6787979 + Sed0028118.1 Sed09g0596 725360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0596 477 ProSiteProfiles Protein kinase domain profile. 170 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0596 477 ProSitePatterns Protein kinases ATP-binding region signature. 176 199 IPR017441 GO:0005524(InterPro)
Sed09g0596 477 CDD STKc_IRAK 176 441 - -
Sed09g0596 477 MobiDBLite consensus disorder prediction 444 469 - -
Sed09g0596 477 SMART serkin_6 170 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0596 477 FunFam Putative receptor-like serine/threonine-protein kinase 245 456 - -
Sed09g0596 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0596 477 FunFam serine/threonine-protein kinase PBS1-like 146 244 - -
Sed09g0596 477 SUPERFAMILY Protein kinase-like (PK-like) 154 449 IPR011009 -
Sed09g0596 477 Pfam Protein kinase domain 172 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0596 477 Gene3D Transferase(Phosphotransferase) domain 1 245 454 - -
Sed09g0596 477 MobiDBLite consensus disorder prediction 425 477 - -
Sed09g0596 477 Gene3D Phosphorylase Kinase; domain 1 150 244 - -
Sed09g0596 477 PANTHER OS01G0323000 PROTEIN 1 469 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3277 Sed-Chr5:42172537 Sed09g0596 Sed-Chr9:6784440 8.30E-148 dispersed
Sed09g0596 Sed-Chr9:6784440 Sed10g1235 Sed-Chr10:26440288 2.10E-129 dispersed
Sed09g0596 Sed-Chr9:6784440 Sed04g3475 Sed-Chr4:44396275 6.00E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79752 PF00069 Pkinase 1.30E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0596 - - - 0.0