Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0596 | ATGGCCCCTGATCTACACACAACACTTTCCAAGAAGACGTTTGTTTTCGGTATGAAGGTGTGGGTGTTTACTGGAATCCTAGTGGGGGTGTTCATTGTAGTAGTCCTCGTGGTGCTATCGATATGCGTTACTTTACGAAGAAAGTCTAGAAGGATCAATGGCATGCTTCCTATCAGCCGTATTCCTACTGCATCTAAGGAAATCAAGGAGATAGGAGTGGATCATGTTTCACCGATCCAGCACGGCACCCACCCCCACGACGACACGGAGTCGGAAAAGGTTCTTCTATATTCGAATAAGGCATATGATTACAGCATAACGAGCTCGGTTGATCATACAGAGATCTATGCCATTGGTTCTGGAGAAGGAAGCAAAGAAGCTAGTGCTTTGCATAGACCCTCGGATTCTGTACCGGACAATTCGCCACTGGCTGGTCTGCCGGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGAATTTTTCAAATGATAATATAATTGGGGAGGGAGGATATGGACTTGTTTATCGAGGTCAACTAATCAATGGCACACCTGTGGCTGTCAAAAAGCTTCTAAATCTGGGACAAGCGGAAACAGAATTCAGAGTGGAAGTAGAAGCGTTTGGGCACGTGCGGCATAAGAACTTAGTTCGGCTGCTAGGGTACTGCATTGAAGGAACACACAGGATTCTAGTATATGAGTACGTAGACAATGGAAATCTAGAACAATGGCTTCATGGAGATCTACGTCAACATGGATATCTCACTTGGGAAGCACGAATCAGAATTCTCCTTGGTACTGCTAAGGCGTTGGCATATTTGCACGAGGCAATTGAACCAAAAATTGTGCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAACTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGTCATATAAACACCAGAGTTATGGGTACGTTTGGATATGTGGCACCTGAGTACGCCAAATCTGGACTTCTAAATGAAAAGAGCGATGTTTATAGCTTTGGAGTGGTCCTTCTTGAAGCAATTACTGGAAGAGACCCGGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGAAGCAAACGTTCAGAAGAAGTGGTAGACCCAGATATAGAGCGAAAACCCTCAGTTAGTGAACTGAAACGAGCTCTTTTAACTGCTTTAAGGTGTGTGGATCCAGATTCTGATAAGAGGCCAAGGATGAGCCAAGTTGCCCGAATGCTCGAGTCCGAGGAATATCCAGTTCCTCGACAGGATCGGAGACCGAAAAAGGGCCAAGCTCATTCAACCAAAATGGAGGCTGAGAAACAGAAAAGAGGACCTAGACGACACAGATAA | 1434 | 44.98 | MAPDLHTTLSKKTFVFGMKVWVFTGILVGVFIVVVLVVLSICVTLRRKSRRINGMLPISRIPTASKEIKEIGVDHVSPIQHGTHPHDDTESEKVLLYSNKAYDYSITSSVDHTEIYAIGSGEGSKEASALHRPSDSVPDNSPLAGLPEFSQLGWGHWFTLRDLELATMNFSNDNIIGEGGYGLVYRGQLINGTPVAVKKLLNLGQAETEFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGDLRQHGYLTWEARIRILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHINTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPDIERKPSVSELKRALLTALRCVDPDSDKRPRMSQVARMLESEEYPVPRQDRRPKKGQAHSTKMEAEKQKRGPRRHR | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6784440 | 6787979 | + | Sed0028118.1 | Sed09g0596 | 725360 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0596 | 477 | ProSiteProfiles | Protein kinase domain profile. | 170 | 446 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed09g0596 | 477 | ProSitePatterns | Protein kinases ATP-binding region signature. | 176 | 199 | IPR017441 | GO:0005524(InterPro) | |
Sed09g0596 | 477 | CDD | STKc_IRAK | 176 | 441 | - | - | |
Sed09g0596 | 477 | MobiDBLite | consensus disorder prediction | 444 | 469 | - | - | |
Sed09g0596 | 477 | SMART | serkin_6 | 170 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed09g0596 | 477 | FunFam | Putative receptor-like serine/threonine-protein kinase | 245 | 456 | - | - | |
Sed09g0596 | 477 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 291 | 303 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed09g0596 | 477 | FunFam | serine/threonine-protein kinase PBS1-like | 146 | 244 | - | - | |
Sed09g0596 | 477 | SUPERFAMILY | Protein kinase-like (PK-like) | 154 | 449 | IPR011009 | - | |
Sed09g0596 | 477 | Pfam | Protein kinase domain | 172 | 437 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed09g0596 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 245 | 454 | - | - | |
Sed09g0596 | 477 | MobiDBLite | consensus disorder prediction | 425 | 477 | - | - | |
Sed09g0596 | 477 | Gene3D | Phosphorylase Kinase; domain 1 | 150 | 244 | - | - | |
Sed09g0596 | 477 | PANTHER | OS01G0323000 PROTEIN | 1 | 469 | IPR052232 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3277 | Sed-Chr5:42172537 | Sed09g0596 | Sed-Chr9:6784440 | 8.30E-148 | dispersed | |
Sed09g0596 | Sed-Chr9:6784440 | Sed10g1235 | Sed-Chr10:26440288 | 2.10E-129 | dispersed | |
Sed09g0596 | Sed-Chr9:6784440 | Sed04g3475 | Sed-Chr4:44396275 | 6.00E-156 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79752 | PF00069 | Pkinase | 1.30E-47 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0596 | - | - | - | 0.0 |