Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0597 ATGGCTTCCCTTTCCTTCTCCTTCTCTTCCTCCCTTCTTCCTCCTTCAATTCCCTTCCCCACCATCTCCCTTTCCTCCAATCCTCGCCTCATTCGCTGCGCATTTTCAGCCACAAAACCCCCTTCTTCTTCTTCATCGGCTGTCAAGAAGCGGCACTGGAAACACGGCGAATTCTCAGGCGTGACAGAGAGATCCGCCCCCAAGAACTCCCCTCTCAAGAACGTCAAGAAGAGATTAGAGCGAAGAAACAAGGCCAAGGCCTGGGCCAATACCGTCACTGAAGCCTTGTCCGATCATATTTCCAATAAGCGTTGCCTTCAGGCTCTTCAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGTTGCTTGTTCTACTTGGAAGATCTGGCCAACCACATCGTGCACGTCAGCTTTTCGAGACAATGATTGAAGAAAGACGCGAGCCTACCTCTGAACTTTACACTGCTTTGCTTGCTGCTTACTGTAGGAACAATCTCATTGATGATGCATTCTCCATTCTTAATCTCATGAAGACCCTCCCTGGCTGCCAGCCTGATGTCTACACTTATAGTATCTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAATTAGTTGAATCTTTGTATGAGGAAATGGCAGAACGACTCATAACTCCAAATACGGTAACACAGAACATAGTCTTAAGTGGGTATGGGAAGATAGGGGAGTACGATCTGATGGAAAAGGTTCTATTAGGAATGCTTGAGAGCTCAAGTTGTAGACCGGATGTGTGGACGATGAATATAATTCTTAGTGTGTTTGGTAACAAAGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAACCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGTAAGAAAAGGATGTATGATAAAATGTCATCCGTGATGGAATATATGCGTAAACTGCAGTTTCCTTGGACAACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGCGGGGGATGCAAAGAATATGGAGTACACCTTCGAGCAGATGCGTGCTGAGAAAATGAGAATGGATACCAAGACATTCTGTTGTCTTATATATGGATATGGCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCGGTTAAGTTGGCTGGAAAATACGAGATTCCAGAGAATACCTCATTTTATAATGCAGTTATATCTGCGTGTGCTAAAGTCGAGGATCTGATGGAAATGGATAGAATATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATAGAAGCATATAGAAAGGAAGGCATGAATGACAGGGTTCATTGCTTGGAACTAGAAAAGCAGCAGGTGATCGATGATGCCTCTAATAACGAGTGA 1440 42.78 MASLSFSFSSSLLPPSIPFPTISLSSNPRLIRCAFSATKPPSSSSSAVKKRHWKHGEFSGVTERSAPKNSPLKNVKKRLERRNKAKAWANTVTEALSDHISNKRCLQALQVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPHRARQLFETMIEERREPTSELYTALLAAYCRNNLIDDAFSILNLMKTLPGCQPDVYTYSILIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGEYDLMEKVLLGMLESSSCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKNMEYTFEQMRAEKMRMDTKTFCCLIYGYGNAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKVEDLMEMDRIFKRMKDKHCQPDSKTYSIMIEAYRKEGMNDRVHCLELEKQQVIDDASNNE 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6794879 6797366 + Sed0024001.1 Sed09g0597 725361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 265 IPR002885 -
Sed09g0597 479 Pfam Pentatricopeptide repeat domain 335 384 IPR002885 -
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Sed09g0597 479 Pfam PPR repeat family 265 313 IPR002885 -
Sed09g0597 479 Pfam PPR repeat family 159 207 IPR002885 -
Sed09g0597 479 Pfam PPR repeat family 406 452 IPR002885 -
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Sed09g0597 479 Gene3D Tetratricopeptide repeat domain 259 329 IPR011990 GO:0005515(InterPro)
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Sed09g0597 479 NCBIfam pentatricopeptide repeat 410 442 IPR002885 -
Sed09g0597 479 NCBIfam pentatricopeptide repeat 232 267 IPR002885 -
Sed09g0597 479 NCBIfam pentatricopeptide repeat 304 332 IPR002885 -
Sed09g0597 479 NCBIfam pentatricopeptide repeat 339 371 IPR002885 -
Sed09g0597 479 NCBIfam pentatricopeptide repeat 197 230 IPR002885 -
Sed09g0597 479 NCBIfam pentatricopeptide repeat 162 196 IPR002885 -
Sed09g0597 479 NCBIfam pentatricopeptide repeat 269 300 IPR002885 -
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Sed09g0597 479 MobiDBLite consensus disorder prediction 39 74 - -
Sed09g0597 479 Pfam PPR repeat 127 154 IPR002885 -
Sed09g0597 479 Pfam PPR repeat 235 260 IPR002885 -
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Sed09g0597 479 PANTHER EXPRESSED PROTEIN 44 462 IPR044179 GO:0003729(InterPro)
Sed09g0597 479 Gene3D Tetratricopeptide repeat domain 89 258 IPR011990 GO:0005515(InterPro)
Sed09g0597 479 Gene3D Tetratricopeptide repeat domain 330 476 IPR011990 GO:0005515(InterPro)
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Sed09g0597 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 189 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0597 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3067 Sed-Chr4:41703920 Sed09g0597 Sed-Chr9:6794879 4.20E-160 dispersed
Sed09g0597 Sed-Chr9:6794879 Sed09g0895 Sed-Chr9:29335972 2.10E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35