Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0600 ATGTTGGAACCATCAGCCAGTTCATGGGTGTTGTGGTCATTTGTTATTGTTACAATGTTGTCAATTGTTTTTCTTGCAAAAATACTAAGAAATTATAATAAAAAGTGTGGTCAGAGTAGATTTCCTCCAGGGAGAAGAAGCTGGCCTGTAATTGGGGATAGCTTCAATTGGTACAAAGCTGTTGCAAGTTCTCATCCTCCTCAATATGTTGAACAACAGGCCAAAAGGTACGGGAAGATCTTCTCGTGCCACGTGTTCGGGAAGCGGGCAGTGGTATCGGTAGATCCCGAGTTTAACCGATACGTGATGCAAAACGAAGGGAAGTTGTTCCAATCAAGCTACCCAAAATCTTTCAAGGATTTAGTAGGGATGAATGGAGTGATCACAGCACAAGGGGAGCAACAAAGAAAGCTTCATGCAATGGCCTCAAATATGATGCGTATAAACAAACTCAAGTTTCCATTCCTTCATGATATTCAAACCATAATCATCCAAACATTGCGCAATTTCCATGATGATCAAGTCATCTTTCTCCAAGATGTTTGCAGGAAGATAGCAATTAATCTAATGGTAAGTCAGCTGTTGGGTGTTTCGAGTGAATCCGAAGTGGATGAGATTAGTGGATTGTTTTATGACTTTGTTGATGGATGTTTGTCTGTTCCTATCAACTTACCTGGCTTTACCTATTACACTGCCATTAAGGCAAGGGAGGAAATCATAAGCAAAATTAAGAAGAAAATAGAAATGCACAAGTTGAGCACATCAATGGAAACAAGGGAATTAGAGGGATTGCTTGGAGGAGTATTAGAGGAGAAAACATTATCAGAGGAGGCCGTTGTAGATTTCATAATCAATCTTCTTTTTGCTGGAAATGAGACCACTTCTAAAACAATGCTTTTTGCTGTCTATTTACTAACCCACTCTCCTAAAGCAATGAACCAACTTCTGGATGAACAAGTTTCTTTGAGAAACAAGTATGGAGATCATATCACATGGCAGGATTACAAATCAATGTCATTTACTCAGTGTGTTATTGATGAGACACTTCGACTGGGAGGAATTGCGATTTGGTTGATGAGGGAAGCAAAAGAAGAGATCAAGTATTCAGATTATGTTATTCCAAAGGGATGTTTTGTTGTTCCATTTCTTTCGGCTGTACATTTGGACGACAATATATATGAAGAAGCCCTAACTTTCAACCCTTGGAGATGGATGGAGCTTAAAAATCAGGAAAGGAGAAATTGGAGAAGTAGCCCATTTTTTGCCCCATTTGGAGGAGGTGCTAGGCTGTGTCCCGGAGCAGAATTGGCTCGTCTCCAAATTGCTTTATTTCTCCACCATTTTGTTACCAACTACAGGTGGACCCAAATGAAAGCAGATAAGATGTGTTTCTTTCCTTCAGCTCGGCTTGTCAACGGCTTCCAAATTCGTTTGAAAAGATGGGAACACTGA 1452 40.08 MLEPSASSWVLWSFVIVTMLSIVFLAKILRNYNKKCGQSRFPPGRRSWPVIGDSFNWYKAVASSHPPQYVEQQAKRYGKIFSCHVFGKRAVVSVDPEFNRYVMQNEGKLFQSSYPKSFKDLVGMNGVITAQGEQQRKLHAMASNMMRINKLKFPFLHDIQTIIIQTLRNFHDDQVIFLQDVCRKIAINLMVSQLLGVSSESEVDEISGLFYDFVDGCLSVPINLPGFTYYTAIKAREEIISKIKKKIEMHKLSTSMETRELEGLLGGVLEEKTLSEEAVVDFIINLLFAGNETTSKTMLFAVYLLTHSPKAMNQLLDEQVSLRNKYGDHITWQDYKSMSFTQCVIDETLRLGGIAIWLMREAKEEIKYSDYVIPKGCFVVPFLSAVHLDDNIYEEALTFNPWRWMELKNQERRNWRSSPFFAPFGGGARLCPGAELARLQIALFLHHFVTNYRWTQMKADKMCFFPSARLVNGFQIRLKRWEH 483
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 6876910 6895206 + Sed0025784.1 Sed09g0600 725364
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0600 483 CDD CYP90-like 75 480 - -
Sed09g0600 483 PANTHER CYTOCHROME P450 26 40 456 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Sed09g0600 483 SUPERFAMILY Cytochrome P450 38 480 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 Pfam Cytochrome P450 42 462 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 Gene3D Cytochrome P450 30 481 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS E-class P450 group IV signature 387 405 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS E-class P450 group IV signature 280 306 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS E-class P450 group IV signature 68 91 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS E-class P450 group IV signature 338 354 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS E-class P450 group IV signature 431 449 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS E-class P450 group IV signature 415 431 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS E-class P450 group IV signature 371 385 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 424 433 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed09g0600 483 PRINTS P450 superfamily signature 289 306 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS P450 superfamily signature 343 354 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS P450 superfamily signature 422 431 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed09g0600 483 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2815 Sed-Chr8:39544781 Sed09g0600 Sed-Chr9:6876910 2.70E-55 dispersed
Sed09g0600 Sed-Chr9:6876910 Sed14g1163 Sed-Chr14:20979121 1.30E-78 dispersed
Sed09g0600 Sed-Chr9:6876910 Sed07g2562 Sed-Chr7:41160663 1.60E-79 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0600 - - - 0.0