Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g0600 | ATGTTGGAACCATCAGCCAGTTCATGGGTGTTGTGGTCATTTGTTATTGTTACAATGTTGTCAATTGTTTTTCTTGCAAAAATACTAAGAAATTATAATAAAAAGTGTGGTCAGAGTAGATTTCCTCCAGGGAGAAGAAGCTGGCCTGTAATTGGGGATAGCTTCAATTGGTACAAAGCTGTTGCAAGTTCTCATCCTCCTCAATATGTTGAACAACAGGCCAAAAGGTACGGGAAGATCTTCTCGTGCCACGTGTTCGGGAAGCGGGCAGTGGTATCGGTAGATCCCGAGTTTAACCGATACGTGATGCAAAACGAAGGGAAGTTGTTCCAATCAAGCTACCCAAAATCTTTCAAGGATTTAGTAGGGATGAATGGAGTGATCACAGCACAAGGGGAGCAACAAAGAAAGCTTCATGCAATGGCCTCAAATATGATGCGTATAAACAAACTCAAGTTTCCATTCCTTCATGATATTCAAACCATAATCATCCAAACATTGCGCAATTTCCATGATGATCAAGTCATCTTTCTCCAAGATGTTTGCAGGAAGATAGCAATTAATCTAATGGTAAGTCAGCTGTTGGGTGTTTCGAGTGAATCCGAAGTGGATGAGATTAGTGGATTGTTTTATGACTTTGTTGATGGATGTTTGTCTGTTCCTATCAACTTACCTGGCTTTACCTATTACACTGCCATTAAGGCAAGGGAGGAAATCATAAGCAAAATTAAGAAGAAAATAGAAATGCACAAGTTGAGCACATCAATGGAAACAAGGGAATTAGAGGGATTGCTTGGAGGAGTATTAGAGGAGAAAACATTATCAGAGGAGGCCGTTGTAGATTTCATAATCAATCTTCTTTTTGCTGGAAATGAGACCACTTCTAAAACAATGCTTTTTGCTGTCTATTTACTAACCCACTCTCCTAAAGCAATGAACCAACTTCTGGATGAACAAGTTTCTTTGAGAAACAAGTATGGAGATCATATCACATGGCAGGATTACAAATCAATGTCATTTACTCAGTGTGTTATTGATGAGACACTTCGACTGGGAGGAATTGCGATTTGGTTGATGAGGGAAGCAAAAGAAGAGATCAAGTATTCAGATTATGTTATTCCAAAGGGATGTTTTGTTGTTCCATTTCTTTCGGCTGTACATTTGGACGACAATATATATGAAGAAGCCCTAACTTTCAACCCTTGGAGATGGATGGAGCTTAAAAATCAGGAAAGGAGAAATTGGAGAAGTAGCCCATTTTTTGCCCCATTTGGAGGAGGTGCTAGGCTGTGTCCCGGAGCAGAATTGGCTCGTCTCCAAATTGCTTTATTTCTCCACCATTTTGTTACCAACTACAGGTGGACCCAAATGAAAGCAGATAAGATGTGTTTCTTTCCTTCAGCTCGGCTTGTCAACGGCTTCCAAATTCGTTTGAAAAGATGGGAACACTGA | 1452 | 40.08 | MLEPSASSWVLWSFVIVTMLSIVFLAKILRNYNKKCGQSRFPPGRRSWPVIGDSFNWYKAVASSHPPQYVEQQAKRYGKIFSCHVFGKRAVVSVDPEFNRYVMQNEGKLFQSSYPKSFKDLVGMNGVITAQGEQQRKLHAMASNMMRINKLKFPFLHDIQTIIIQTLRNFHDDQVIFLQDVCRKIAINLMVSQLLGVSSESEVDEISGLFYDFVDGCLSVPINLPGFTYYTAIKAREEIISKIKKKIEMHKLSTSMETRELEGLLGGVLEEKTLSEEAVVDFIINLLFAGNETTSKTMLFAVYLLTHSPKAMNQLLDEQVSLRNKYGDHITWQDYKSMSFTQCVIDETLRLGGIAIWLMREAKEEIKYSDYVIPKGCFVVPFLSAVHLDDNIYEEALTFNPWRWMELKNQERRNWRSSPFFAPFGGGARLCPGAELARLQIALFLHHFVTNYRWTQMKADKMCFFPSARLVNGFQIRLKRWEH | 483 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 6876910 | 6895206 | + | Sed0025784.1 | Sed09g0600 | 725364 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g0600 | 483 | CDD | CYP90-like | 75 | 480 | - | - | |
| Sed09g0600 | 483 | PANTHER | CYTOCHROME P450 26 | 40 | 456 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Sed09g0600 | 483 | SUPERFAMILY | Cytochrome P450 | 38 | 480 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | Pfam | Cytochrome P450 | 42 | 462 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | Gene3D | Cytochrome P450 | 30 | 481 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | E-class P450 group IV signature | 387 | 405 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | E-class P450 group IV signature | 280 | 306 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | E-class P450 group IV signature | 68 | 91 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | E-class P450 group IV signature | 338 | 354 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | E-class P450 group IV signature | 431 | 449 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | E-class P450 group IV signature | 415 | 431 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | E-class P450 group IV signature | 371 | 385 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 424 | 433 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed09g0600 | 483 | PRINTS | P450 superfamily signature | 289 | 306 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | P450 superfamily signature | 343 | 354 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | P450 superfamily signature | 422 | 431 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed09g0600 | 483 | PRINTS | P450 superfamily signature | 431 | 442 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g2815 | Sed-Chr8:39544781 | Sed09g0600 | Sed-Chr9:6876910 | 2.70E-55 | dispersed | |
| Sed09g0600 | Sed-Chr9:6876910 | Sed14g1163 | Sed-Chr14:20979121 | 1.30E-78 | dispersed | |
| Sed09g0600 | Sed-Chr9:6876910 | Sed07g2562 | Sed-Chr7:41160663 | 1.60E-79 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g0600 | - | - | - | 0.0 |