Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0603 ATGGGGAAGAAAGGATCTGGCAGCTCTTGGCTCACTGCTGTCAAAAGAGCCTTCAGATCTCCCTCTAAAGATGATGATGAAAAGGGGAGGGAGAAACGGCGGTGGATTTTTAGAAAACAGTCAAATCAGCACCAGGATACAGTCGCCGGCGTTCAAGCAGCGCCGCCTAAGCCGGAGGCTCCGGCGGAAGAGCAGAAACATGCCCTTGCCGCGGCTGAGGCTGCCATGGTGGCTGCCAGAGCGGCGGCTCAAGCTGTCCAGCTGGCTATGCCGGTCTCGGCTCGATTCGATCTTTATTGCCATGCTGCCATTGTGATTCAAACATCCTTTAGAGGATATTTAGCAAGGAGAGCACTCCGAGCGCTCAGGGGGCTAGTGAAGCTACAAGCATTGGTGAGAGGACACAACGTTCGGAAGCAAGCGAAGACGACGTTGCAATGCATGAAAGCATTAGTAAGAGTGCAAGAACAAGTACTGGACAACCGGATGCGACGCTCCCTCGAAGGAAGCCGGCGGTCCACCTTCAGCGACACGAACAGCAGCGTGTACGAATCGCGGTACGCTCACGATCATCACGTGACCGAAAGGAAGACTATGTGCATGTCAAGAGAAGGAAGCAGTGTGACAGAGGATTGGGATGAACGGTCTCACACAGTTGAAGAAGTTAAGGCAATGTTGCAACATAGAAGAGATGCTGCTTTGAATCGTGATAATATTTTGTCTCACTCATTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCCATAGGAAACCAAGCAGAGCTCGAAGAAGCCCCGAAATGGCTTGACCAGTGGATGGGAAAAAAGCCATGGGAATGCAGGGCAAGAGCTTCCACAGATCACAGACCACAACCCCTCAAAACCCTCGAAATCGACACGTCTCGACCGTACTCGTACCTATCCCCCAACACCCTCCACACAACCAACAATTACCAAACTCAATCACAAAGATCCAACTCACTTTCATCCTCCTCCCCACTCCATAGAGCCCATCACCACCAGTTCCCCATCACCCCATCCCCCTCGAAATCCCGTCTGATCCCACAAGTCCGGTCCGCAAGCCCCCGCTGCATCAGGGATGATAGAAACCAAACCATCCACCAACATATTGCATCTAACACACCAAGTTTAAGATCCAAACATCACAATGGGAGTGGTATTTCACTGCCTAATTACATGGCAGCGACCGAGTCAGCCAAGGCTAGAGTGCGGTCGCAAAGCGCCCCGAGGCAGAGGCCGGCAACGCCGGAGAGGGAACGAGCTGGGTCGGCGAGGAAACGGTTGTCGTTTCCGGTACCGCCGGATCCGTACAGTCGAATGGTCGGGGTGTATGGGAATAGCATGAAGAGTCCAAGCTTTAAGAGTGTTTGTGGAAGGTTTGAGGAAAGGTCTATCTATTCTTCTTGCTACACAGAGAGCCATGGTGGAGAGGTTTCCCCATCTTCAACCACTGATCTCAGAAGGTGGTTGAGATGA 1500 52.13 MGKKGSGSSWLTAVKRAFRSPSKDDDEKGREKRRWIFRKQSNQHQDTVAGVQAAPPKPEAPAEEQKHALAAAEAAMVAARAAAQAVQLAMPVSARFDLYCHAAIVIQTSFRGYLARRALRALRGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEQVLDNRMRRSLEGSRRSTFSDTNSSVYESRYAHDHHVTERKTMCMSREGSSVTEDWDERSHTVEEVKAMLQHRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEAPKWLDQWMGKKPWECRARASTDHRPQPLKTLEIDTSRPYSYLSPNTLHTTNNYQTQSQRSNSLSSSSPLHRAHHHQFPITPSPSKSRLIPQVRSASPRCIRDDRNQTIHQHIASNTPSLRSKHHNGSGISLPNYMAATESAKARVRSQSAPRQRPATPERERAGSARKRLSFPVPPDPYSRMVGVYGNSMKSPSFKSVCGRFEERSIYSSCYTESHGGEVSPSSTTDLRRWLR 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7017003 7022481 - Sed0018114.1 Sed09g0603 725367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0603 499 Coils Coil 62 82 - -
Sed09g0603 499 PANTHER IQ-DOMAIN 5-RELATED 10 431 - -
Sed09g0603 499 MobiDBLite consensus disorder prediction 302 337 - -
Sed09g0603 499 ProSiteProfiles IQ motif profile. 123 150 - -
Sed09g0603 499 Pfam Protein of unknown function (DUF4005) 362 459 IPR025064 -
Sed09g0603 499 Gene3D - 97 152 - -
Sed09g0603 499 MobiDBLite consensus disorder prediction 283 362 - -
Sed09g0603 499 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515(InterPro)
Sed09g0603 499 Pfam IQ calmodulin-binding motif 126 142 IPR000048 GO:0005515(InterPro)
Sed09g0603 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 144 IPR027417 -
Sed09g0603 499 SMART iq_5 98 120 IPR000048 GO:0005515(InterPro)
Sed09g0603 499 SMART iq_5 121 142 IPR000048 GO:0005515(InterPro)
Sed09g0603 499 MobiDBLite consensus disorder prediction 18 40 - -
Sed09g0603 499 ProSiteProfiles IQ motif profile. 101 127 - -
Sed09g0603 499 MobiDBLite consensus disorder prediction 1 64 - -
Sed09g0603 499 MobiDBLite consensus disorder prediction 479 499 - -
Sed09g0603 499 MobiDBLite consensus disorder prediction 404 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0603 Sed-Chr9:7017003 Sed14g0426 Sed-Chr14:4402517 2.00E-24 dispersed
Sed09g0603 Sed-Chr9:7017003 Sed03g0040 Sed-Chr3:290565 6.30E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0603 - - - 0.0