Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0619 ATGTTCTTCTCCGGCGATTCATCTACTCGCAAGCGAGTCGATTTGGGTGGCCGCAGTTCCAAGGAAAGGGACAGGAAGAAGCTTCTCGAGCAGACTCGAATGGAGCGGAACCGCCGCTTGTCCTTGAAGCAGCAAAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGTCTCTGAAGCTGAACGTTGTAGGGTTCGAGAGCAATTTCATGTTACCTATGGAAAGCGTTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTATAATGCGAAACACGCTGGTGATGTTTTGGTTCTTGTAGAGGCATGTTGCTTACTTCAGCACTTTGTTCAAAAAAATGGGGATTTGTTGAGCATTTTTGCTGGCAAGGATTATATATCTAACAAGGCCATAGTGGATTACAGAATTAAGAAATTTGCATATGCTTGCATCCAGACTGTACACCACAAAAGAAACCAAGTGAGGGATCAACTTTTTTCTGCACCAGAGAATTCTAACTCACCTGCAACTCTATTGTTAGACACACTTGTTCTCTTATTGCAACCTGAACTCCCATGGGTTTGCAAAACTGTTGGCTACTTTCTCGAAAGAAATGCCTATGCCCTGATTAGGGATATCACTTTAACAGGGACGGAAAGTAATAGTTTACATCCCAACAGTGGTTCAGTGCCTTCTTTAGAACGTCTGCTTTCTCTTTTAAGTTCTCATGTTGGTGAGAAGCCATGCTGTTGCCCACATGTTGATCCCAATTGGAGTTTCTCCTCCCAAATCCTTACTTTTCCTTTACTGTGGCAGACATTCCCTTACTTAAAAGAGGTTTTCGCTAGACGGGGATTGATTGGACATTACATCCATCAGATGTCATCTTGTATTGAACATTATTCAAATGTACTCCCAAAGGATGTAACAGCTGACATTCCTGGCTATGCTTGCATTCTTGGAAATGTATTAGAAATTTCCAGAACCGCCCTATCTCAACCTGACTTCTCGTTCGAATTGGCGGTAGATCTTGCTTCCGTCACAACATTCTTGTTGGAACTACTTCCTTCGATGAAACCACCTCTTAGAGATATGAAAGAGAGTGCTGTGTTGGGTGAGGATGATGTGGTTTTGTCGGATCAAGAAATAGAGTTAGCATTGAATAAAGATGTTGAGAAGCAGATTTGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGACAGATTTCACGAGTTAGTGGGTCTTATGATGGTCCTGATGATAAAGAGGCCAAAGCTGTTGGTACAGCATGTGCTTTTCTTCATGTCACTTTCAATACCCTACCTCTGGAACAAATTATGACTGTTCTAGCTTACAGAACAGAGTTAGTTCCAGTACTTTGGAATTTTATAAAAAGGTGCCATGAGAACCAAAAATGGTCATCCTTTTCAGAGAAGTTGGCATATTTATCACGGGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCTGTGTACAAGCACATGCTGACAATAATTGACAATGAGGAGTTTTATGAGCAGGAGAAGCCACTGTCATTAAAGGATATTAGATGCCTGATCATTATTTTAAGACAGGCCCTATGGCAGCTTTTATGGGGGAGTCCTACAGCTCCTAGTAATTCTGCGAAATCTGTTACTAGTGCAAATGTTAGTAAGAGGCACACCGTTGAATTCATTCAATACAGGGTTACCATTGTTGCCTCAGAGCTTCTGTCACAGTTGCAAGACTGGAACAATAGACGACAATTTACACCCCCCAGTGACTTCCACGCTGATGCAGTGAATGATTATTTCATTTCTCAGGCAGTGATAGAAAATACCAGAGCAAATGATATACTTAAGCAAGCTCCATTTTTAGTTCCATTTACAAGCAGGGTTAAAATTTTCACTACACAACTAGCAGCAGCTAGGCAAAGGGATGGTTCTCATGTGGTTTTTACCAGAAATCGGTTTAGAATTCGACGAAATCATATACTGGAAGATGCTTATAATCAGATGAGTGCATTGACTGAAGATGATCTTCGAGGATCGATACGCGTGTCATTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGACGGCGGTGGTATTTTCAAAGATTTCATGGAGAACATTACACGTGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCACTTGCTCTACCCCAATCCTGGTTCAGGAATGATACATGATCAACATCTACAATTTTTTCACTTTCTCGGAGTTCTTTTGGCAAAGGCCATGTTTGAAGGAATTCTTGTTGATATACCTTTTGCAACATTCTTCTTGAGCAAGCTAAAACAGAAGTACAACTATCTGAATGACTTGCCATCCTTGGATCCTGAATTGTATCGCCACCTTATTTTCTTAAAGCATTTTGAAGGCGACATTTCCGATCTGGAGCTGTACTTCGTTATTATAAACAATGAATATGGAGAGCAAACAGAAGAAGAGCTACTCCCTGGAGGAAAAAACCGTCGTGTTACTAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCACCGTTTGAACTTTCAGATACGGCAGCAAAGTTCTCATTTCTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATCGATATGTTCAATGAGCATGAATTACAGCTTTTGATATCCGGCTCGCTCGACAGCTTAGATGTTGATGACCTACGTACAAATACTACTTATTCAAGTGGCTATCATAAAGAACATTACGTCATTGATATGTTTTGGGAAGTTATCAAAAGTTTCTCAGTGGAAAACCAAAAGAAATTTCTGAAGTTTGTGACCGGTTGCTCCCGAGGACCGCTTCTTGGCTTTAAATATCTTGAGCCATGTTTTTGCATCCAAAGGGCTGCTGGTAATGCAAACGAAGAAGCTCTTGATCGCTTACCTACATCAGCTACTTGTATGAATCTTTTGAAGCTTCCCCCTTATAGAAGCAAGGAGCAACTGGCAAACAAATTGCTCTATGCCATAAATGCAGATGCTGGTTTTGACTTAAGCTAA 3105 40.93 MFFSGDSSTRKRVDLGGRSSKERDRKKLLEQTRMERNRRLSLKQQNFAALKIQKCFRGRKVSEAERCRVREQFHVTYGKRCEKVDRHCFGPDSEFFHQLLFFYNAKHAGDVLVLVEACCLLQHFVQKNGDLLSIFAGKDYISNKAIVDYRIKKFAYACIQTVHHKRNQVRDQLFSAPENSNSPATLLLDTLVLLLQPELPWVCKTVGYFLERNAYALIRDITLTGTESNSLHPNSGSVPSLERLLSLLSSHVGEKPCCCPHVDPNWSFSSQILTFPLLWQTFPYLKEVFARRGLIGHYIHQMSSCIEHYSNVLPKDVTADIPGYACILGNVLEISRTALSQPDFSFELAVDLASVTTFLLELLPSMKPPLRDMKESAVLGEDDVVLSDQEIELALNKDVEKQICDAIDPRFLLQLANALFGQISRVSGSYDGPDDKEAKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWNFIKRCHENQKWSSFSEKLAYLSRDAPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRCLIIILRQALWQLLWGSPTAPSNSAKSVTSANVSKRHTVEFIQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRANDILKQAPFLVPFTSRVKIFTTQLAAARQRDGSHVVFTRNRFRIRRNHILEDAYNQMSALTEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHDQHLQFFHFLGVLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHFEGDISDLELYFVIINNEYGEQTEEELLPGGKNRRVTSENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHELQLLISGSLDSLDVDDLRTNTTYSSGYHKEHYVIDMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGFKYLEPCFCIQRAAGNANEEALDRLPTSATCMNLLKLPPYRSKEQLANKLLYAINADAGFDLS 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7698943 7719752 + Sed0005984.1 Sed09g0619 725383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0619 1034 Gene3D Hect, E3 ligase catalytic domains 674 912 - -
Sed09g0619 1034 Gene3D Hect, E3 ligase catalytic domain 798 877 - -
Sed09g0619 1034 MobiDBLite consensus disorder prediction 11 30 - -
Sed09g0619 1034 CDD HECTc 672 1032 IPR000569 GO:0004842(InterPro)
Sed09g0619 1034 Gene3D Hect, E3 ligase catalytic domain 916 1033 - -
Sed09g0619 1034 SUPERFAMILY Hect, E3 ligase catalytic domain 665 1026 IPR035983 GO:0004842(InterPro)
Sed09g0619 1034 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1034 IPR044611 GO:0000209(PANTHER)|GO:0000209(InterPro)|GO:0006511(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Sed09g0619 1034 FunFam Putative Ubiquitin-protein ligase E3C 916 1033 - -
Sed09g0619 1034 SMART hect_3 691 1034 IPR000569 GO:0004842(InterPro)
Sed09g0619 1034 ProSiteProfiles HECT domain profile. 693 1034 IPR000569 GO:0004842(InterPro)
Sed09g0619 1034 MobiDBLite consensus disorder prediction 1 30 - -
Sed09g0619 1034 Pfam HECT-domain (ubiquitin-transferase) 729 1034 IPR000569 GO:0004842(InterPro)
Sed09g0619 1034 FunFam Putative Ubiquitin-protein ligase E3C 798 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0619 K10589 - - csv:101218340 1884.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1387 Sed-Chr3:8811662 Sed09g0619 Sed-Chr9:7698943 6.60E-61 dispersed
Sed04g0191 Sed-Chr4:1352219 Sed09g0619 Sed-Chr9:7698943 2.50E-60 dispersed
Sed05g3486 Sed-Chr5:43651327 Sed09g0619 Sed-Chr9:7698943 5.30E-30 dispersed
Sed05g3487 Sed-Chr5:43651327 Sed09g0619 Sed-Chr9:7698943 1.10E-24 dispersed
Sed02g0585 Sed-Chr2:43505593 Sed09g0619 Sed-Chr9:7698943 2.40E-89 transposed
Sed04g3074 Sed-Chr4:41759963 Sed09g0619 Sed-Chr9:7698943 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31