Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0625 ATGGTCGCTGAAGCTGAGATCGCATTCCCCAAAACCGTTCATCTTCGCGTATCCGAAGATACCGACGTTCAGATCCATTTGCCCCATCCTTCTTCTTCGCCAATCTTCCCCCAGGTAGTTAGTTGTTCAGACATTGTTGAAGATGTCCATATAATAGAGTCAACTTCCATAGATTTTGTTCCGAACATTCGATCGGGTAGCTATGCGGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATTGATGATCTATCTACCCAACTCAGATCTATGTTCAAGTGTCCTATGCCCAGCAGTTTTTATGCTGTTTTCGATGGTCATGGAGGGCCTCAAGCAGCTGCCTTTGTCAAGAGGAACGCCATGAGACTATTCTTCGAAGATGCCGATTGGTTAAAAAAGCTGGATATTGATTCTATTTCCATGAAAGACTTGGAGAATTCTCATCGCAAAGCGTTTCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTGGCAGCTCATGTGGGACAACTGCGTTAACGGCACTGGTTCTCGGAAGGCATTTGCTTGTAGCAAACGCGGGCGACTGTCGAGCAGTCTTATGTAGGAAAGGTGTAGCAGTACCAATGTCTCAGGATCACAGGCCTTCTAATTTACTCGAGCTCAAGCGAGTCGAAGGGATGGGTGGATTCGTAGACGATGGGTACGTGAATGGCTATATTGCAGTAACCAGAACCTTGGGGGATTGGGACCTGAAATCGCCAAATGGCTCCTCATCACCTCTGATTTCTGACCCACAAGTGGAGCATGCGGTTTTAACAAAGGATGACGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGATGTCATGTCAAGCCAATATGCGGTCAGTCTTGTTCGACGAGGCTTGAGGAAGCACAACGACCCTCATCAAAGTTCCCGAGAATTAGTCCTTGAAGCTTTGCGCCTCAACACATCAGATAATCTTACCGTAGTGGTGATCTGTTTTTCTTCTCCCAGCTGCATTCCTCCGAAGCGAATATGGCAGTCGTCGTGTAGTCTGACAGAAGAGGCTAGAAGTAGATTGAGGAATTTGTTAGAAGGAAACTGA 1104 46.83 MVAEAEIAFPKTVHLRVSEDTDVQIHLPHPSSSPIFPQVVSCSDIVEDVHIIESTSIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSTQLRSMFKCPMPSSFYAVFDGHGGPQAAAFVKRNAMRLFFEDADWLKKLDIDSISMKDLENSHRKAFLLADLALADEQSVGSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLELKRVEGMGGFVDDGYVNGYIAVTRTLGDWDLKSPNGSSSPLISDPQVEHAVLTKDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVLEALRLNTSDNLTVVVICFSSPSCIPPKRIWQSSCSLTEEARSRLRNLLEGN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7796229 7809640 - Sed0009437.1 Sed09g0625 725389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0625 367 PANTHER PROTEIN PHOSPHATASE 2C 54 334 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed09g0625 367 CDD PP2Cc 63 334 IPR001932 -
Sed09g0625 367 Pfam Protein phosphatase 2C 72 326 IPR001932 -
Sed09g0625 367 Gene3D - 52 338 IPR036457 -
Sed09g0625 367 SMART PP2C_4 54 332 IPR001932 -
Sed09g0625 367 ProSiteProfiles PPM-type phosphatase domain profile. 64 334 IPR001932 -
Sed09g0625 367 FunFam Probable protein phosphatase 2C 22 48 337 - -
Sed09g0625 367 ProSitePatterns PPM-type phosphatase domain signature. 103 111 IPR000222 GO:0043169(InterPro)
Sed09g0625 367 SUPERFAMILY PP2C-like 53 335 IPR036457 -
Sed09g0625 367 SMART PP2C_SIG_2 79 334 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0626 Sed-Chr7:4735366 Sed09g0625 Sed-Chr9:7796229 6.60E-97 dispersed
Sed09g0625 Sed-Chr9:7796229 Sed09g1325 Sed-Chr9:37401446 4.10E-96 dispersed
Sed04g3071 Sed-Chr4:41746104 Sed09g0625 Sed-Chr9:7796229 2.60E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39546 PF00481 PP2C 3.90E-64 CL0238 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0625 K14803 - csv:101207477 604.749