Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0625 | ATGGTCGCTGAAGCTGAGATCGCATTCCCCAAAACCGTTCATCTTCGCGTATCCGAAGATACCGACGTTCAGATCCATTTGCCCCATCCTTCTTCTTCGCCAATCTTCCCCCAGGTAGTTAGTTGTTCAGACATTGTTGAAGATGTCCATATAATAGAGTCAACTTCCATAGATTTTGTTCCGAACATTCGATCGGGTAGCTATGCGGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATTGATGATCTATCTACCCAACTCAGATCTATGTTCAAGTGTCCTATGCCCAGCAGTTTTTATGCTGTTTTCGATGGTCATGGAGGGCCTCAAGCAGCTGCCTTTGTCAAGAGGAACGCCATGAGACTATTCTTCGAAGATGCCGATTGGTTAAAAAAGCTGGATATTGATTCTATTTCCATGAAAGACTTGGAGAATTCTCATCGCAAAGCGTTTCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTGGCAGCTCATGTGGGACAACTGCGTTAACGGCACTGGTTCTCGGAAGGCATTTGCTTGTAGCAAACGCGGGCGACTGTCGAGCAGTCTTATGTAGGAAAGGTGTAGCAGTACCAATGTCTCAGGATCACAGGCCTTCTAATTTACTCGAGCTCAAGCGAGTCGAAGGGATGGGTGGATTCGTAGACGATGGGTACGTGAATGGCTATATTGCAGTAACCAGAACCTTGGGGGATTGGGACCTGAAATCGCCAAATGGCTCCTCATCACCTCTGATTTCTGACCCACAAGTGGAGCATGCGGTTTTAACAAAGGATGACGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGATGTCATGTCAAGCCAATATGCGGTCAGTCTTGTTCGACGAGGCTTGAGGAAGCACAACGACCCTCATCAAAGTTCCCGAGAATTAGTCCTTGAAGCTTTGCGCCTCAACACATCAGATAATCTTACCGTAGTGGTGATCTGTTTTTCTTCTCCCAGCTGCATTCCTCCGAAGCGAATATGGCAGTCGTCGTGTAGTCTGACAGAAGAGGCTAGAAGTAGATTGAGGAATTTGTTAGAAGGAAACTGA | 1104 | 46.83 | MVAEAEIAFPKTVHLRVSEDTDVQIHLPHPSSSPIFPQVVSCSDIVEDVHIIESTSIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSTQLRSMFKCPMPSSFYAVFDGHGGPQAAAFVKRNAMRLFFEDADWLKKLDIDSISMKDLENSHRKAFLLADLALADEQSVGSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLELKRVEGMGGFVDDGYVNGYIAVTRTLGDWDLKSPNGSSSPLISDPQVEHAVLTKDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVLEALRLNTSDNLTVVVICFSSPSCIPPKRIWQSSCSLTEEARSRLRNLLEGN | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 7796229 | 7809640 | - | Sed0009437.1 | Sed09g0625 | 725389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0625 | 367 | PANTHER | PROTEIN PHOSPHATASE 2C | 54 | 334 | IPR015655 | GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro) | |
Sed09g0625 | 367 | CDD | PP2Cc | 63 | 334 | IPR001932 | - | |
Sed09g0625 | 367 | Pfam | Protein phosphatase 2C | 72 | 326 | IPR001932 | - | |
Sed09g0625 | 367 | Gene3D | - | 52 | 338 | IPR036457 | - | |
Sed09g0625 | 367 | SMART | PP2C_4 | 54 | 332 | IPR001932 | - | |
Sed09g0625 | 367 | ProSiteProfiles | PPM-type phosphatase domain profile. | 64 | 334 | IPR001932 | - | |
Sed09g0625 | 367 | FunFam | Probable protein phosphatase 2C 22 | 48 | 337 | - | - | |
Sed09g0625 | 367 | ProSitePatterns | PPM-type phosphatase domain signature. | 103 | 111 | IPR000222 | GO:0043169(InterPro) | |
Sed09g0625 | 367 | SUPERFAMILY | PP2C-like | 53 | 335 | IPR036457 | - | |
Sed09g0625 | 367 | SMART | PP2C_SIG_2 | 79 | 334 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0626 | Sed-Chr7:4735366 | Sed09g0625 | Sed-Chr9:7796229 | 6.60E-97 | dispersed | |
Sed09g0625 | Sed-Chr9:7796229 | Sed09g1325 | Sed-Chr9:37401446 | 4.10E-96 | dispersed | |
Sed04g3071 | Sed-Chr4:41746104 | Sed09g0625 | Sed-Chr9:7796229 | 2.60E-169 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39546 | PF00481 | PP2C | 3.90E-64 | CL0238 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0625 | K14803 | - | csv:101207477 | 604.749 |