Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0640 ATGGCGAAACCCTCGAAGCGACCGGCGTCTTCCGATGAAGCCATGTCCGGTGGATCGAGCTCGTCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAACGAGGAAGAAGACCAGGAGGAGCTCGAAGCGGTTGCTCGCTCGGCTGGCTCCGATGAGGATGAAGCTCCCGACGATTCGGATAACGATGCCGATGATGGCGAGGAAGAGGATGGAAGTAACGATGGCAGTGATGATAAAGCCAGTATCAGCAGGCGTGAGAAGGCCAGACTAAAAGAAATGCAAAAACTGAAGAAGCAGAAGATTCAAGATATGTTAGATGCACAGAATGCTGCAATTGATGCTGATATGAATAATAAGGGGAAGGGACGCTTGAAGTATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCAAAAGGCGACCATTCTTCTTCCCAAAAGAAAACAAAGGGAAGGGGTCGCCATGCATCAAAGCTAACTGAAGAAGAAGAAGATGAAGAATATCTTAAAGAGGAAGAAGATGGTCTATCTGGGACTGGCAACACTCGTCTCCTTTCGCAACCAACATGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGGTTAAATTGGCTCATTCGGCTGTATGAGAATGGCATAAATGGAATCCTTGCAGATGAGATGGGGCTTGGCAAGACATTACAAACCATCTCTTTGTTGGGATATCTCCACGAGTACAGAGGCATTAAAGGCCCCCATATGGTAGTTGCACCAAAATCTACTCTGGGAAACTGGATGAATGAAATTCGTCGCTTTTGCCCAGTATTGCGTGCTGTAAAGTTCCTTGGAAATCCCGATGAAAGGAGGGATATACGGGAAAATTTACTTGTTGCTGGGAAGTTTGATGTCTGTGTTACCAGTTTTGAAATGGCCATCAAGGAGAAGGGTTGCTTGCGTCGTTTTAGTTGGCGCTACATCATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTTTAGCACCAACTATCGTCTTCTTATCACTGGCACGCCGCTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTTCTTTTGCCTGAAATATTTAGTTCGGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGACAATGACCAGCAGGAGGTTGTTCAACAACTTCACAAGGTCCTTCGGCCTTTTCTTCTTCGAAGGCTGAAGTCGGATGTTGAGAAAGGCTTACCTCCTAAAAAAGAAACAATACTCAAAGTAGGCATGTCACAGATGCAAAAGCAATACTATCGTGCTTTGCTCCAGAAGGATCTTGAAGTTGTAAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATAGCAATGCAGCTACGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACTGGAGATCATCTTATTACAAGTGCTGGTAAAATGGTTCTCTTGGACAAGTTGCTTCCAAAGCTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTAGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGCCGGATTGATGGTAACACTGGCGGTGATGATCGTGATGCATCCATTGAAGCCTTCAACAGGCCAGGAAGTGAAAAATTTGTTTTCTTGCTTTCAACCAGAGCAGGAGGTCTTGGTATTAATCTTGCCACTGCAGATGTCGTTATCCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGTTCTGAGTATACCATTGAGGAAAAAGTTATTGAAAGGGCTTACAAGAAACTTGCCCTCGATGCTTTGGTGATTCAACAAGGACGTTTGGCGGAGCAGAAAACTGTCAACAAGGATGAGCTGCTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGACAGAATCATTGCAAAGGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCTATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGACGACGAAAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAACGGAAGCGCAATTACTCGGAATCAGAATACTTCAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCTAGGATTCCTCGAATGCCTCAGTTGCACGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAATCAGTTGAAAGACACAATAGATGTTGAGGAGTCTGAAGACGTGGGCGATCCCTTGACTGCCGAAGAGCTGGAGGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGAAGAGATTTCAGTACATTTCTTAGGGCCTGTGAGAAGTATGGGCGAGATGATATTAAAAGTATAGCTTCAGAGATGGAAGGAAAAACAGATGAAGAAGTTGAAAGATATGCAAATGTCTTTAAAGAGAGATACAAGGAGTTAAATGATTATGATAGAATCATTAAGAACATAGAAAGAGGGGAAGCACGGATTTCTCGTAAAGATGAAATAATGAAAGCCATTGGCAAGAAACTGGATCGCTACAGAAATCCATGGCTGGAGCTCAAGATCCAGTACGGCCAGAATAAAGGGAAGTTGTATAACGAAGAATGTGACCGCTTCATGATATGCATGGTTCACAAGCTTGGTTATGGAAACTGGGACGAACTGAAAGCAGCATTTCGCACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACAACACAAGAACTTGCGAGGAGGTGCGATACCTTAATCCGATTAGTGGAGAAGGAAAACCAAGAATATGATGAAAGGGAGAGACAGGCCCGCAAAGAAAAGAAACTTGCTAAGAGTATGACGCCATCGAAACGTGCCTTGGCTAGGCAGACTGAGAGCCCAACTAACCTAAAGAAACGGAGGCAATTATCAATGGATGACTTTGTAAACTCTGGAAAACGGAGGAAATAA 3213 43.01 MAKPSKRPASSDEAMSGGSSSSEEEEQTNEQINEEEDQEELEAVARSAGSDEDEAPDDSDNDADDGEEEDGSNDGSDDKASISRREKARLKEMQKLKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLLSQPTCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKGCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGDDRDASIEAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCSEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEESEDVGDPLTAEELEEKERLLEEGFSSWSRRDFSTFLRACEKYGRDDIKSIASEMEGKTDEEVERYANVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPTNLKKRRQLSMDDFVNSGKRRK 1070
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8056951 8065835 + Sed0025792.1 Sed09g0640 725404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0640 1070 Gene3D - 846 900 - -
Sed09g0640 1070 Coils Coil 90 110 - -
Sed09g0640 1070 Gene3D ISWI, HAND domain 747 845 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Sed09g0640 1070 MobiDBLite consensus disorder prediction 1018 1070 - -
Sed09g0640 1070 MobiDBLite consensus disorder prediction 27 41 - -
Sed09g0640 1070 SUPERFAMILY Homeodomain-like 849 899 IPR009057 -
Sed09g0640 1070 SMART ultradead3 191 383 IPR014001 -
Sed09g0640 1070 MobiDBLite consensus disorder prediction 139 181 - -
Sed09g0640 1070 Pfam SNF2-related domain 198 475 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Sed09g0640 1070 SMART helicmild6 526 610 IPR001650 -
Sed09g0640 1070 CDD DEXHc_SMARCA1_SMARCA5 192 412 IPR044754 GO:0005524(InterPro)
Sed09g0640 1070 MobiDBLite consensus disorder prediction 1018 1034 - -
Sed09g0640 1070 MobiDBLite consensus disorder prediction 53 74 - -
Sed09g0640 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 692 IPR027417 -
Sed09g0640 1070 Gene3D iswi atpase 901 933 - -
Sed09g0640 1070 ProSiteProfiles SANT domain profile. 845 897 IPR017884 -
Sed09g0640 1070 MobiDBLite consensus disorder prediction 12 26 - -
Sed09g0640 1070 Pfam HAND 759 844 IPR015194 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Sed09g0640 1070 MobiDBLite consensus disorder prediction 75 96 - -
Sed09g0640 1070 SMART sant 948 1009 IPR001005 -
Sed09g0640 1070 SMART sant 846 895 IPR001005 -
Sed09g0640 1070 Coils Coil 22 42 - -
Sed09g0640 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 934 1037 - -
Sed09g0640 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 410 IPR027417 -
Sed09g0640 1070 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 10 1040 - GO:0000785(PANTHER)|GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0006357(PANTHER)|GO:0016887(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140658(PANTHER)
Sed09g0640 1070 Gene3D - 416 708 IPR027417 -
Sed09g0640 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 846 900 - -
Sed09g0640 1070 SUPERFAMILY Homeodomain-like 901 1023 IPR009057 -
Sed09g0640 1070 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 758 848 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Sed09g0640 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 372 IPR014001 -
Sed09g0640 1070 MobiDBLite consensus disorder prediction 1048 1070 - -
Sed09g0640 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 651 IPR001650 -
Sed09g0640 1070 Gene3D - 196 411 IPR038718 -
Sed09g0640 1070 FunFam Chromatin-remodeling complex ATPase 196 411 - -
Sed09g0640 1070 CDD SF2_C_SNF 496 621 IPR049730 -
Sed09g0640 1070 MobiDBLite consensus disorder prediction 1 96 - -
Sed09g0640 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 416 708 - -
Sed09g0640 1070 CDD SANT 849 893 IPR001005 -
Sed09g0640 1070 Pfam Helicase conserved C-terminal domain 497 610 IPR001650 -
Sed09g0640 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 747 845 - -
Sed09g0640 1070 Pfam SLIDE 903 1013 IPR015195 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006338(InterPro)
Sed09g0640 1070 Coils Coil 1003 1030 - -
Sed09g0640 1070 Gene3D - 934 1037 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0640 K11654 - - csv:101221495 1942.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1819 Sed-Chr4:32929820 Sed09g0640 Sed-Chr9:8056951 0.00E+00 dispersed
Sed04g1883 Sed-Chr4:33513160 Sed09g0640 Sed-Chr9:8056951 1.20E-135 dispersed
Sed06g0296 Sed-Chr6:2602571 Sed09g0640 Sed-Chr9:8056951 7.00E-48 dispersed
Sed06g0297 Sed-Chr6:2608651 Sed09g0640 Sed-Chr9:8056951 8.80E-68 dispersed
Sed07g1698 Sed-Chr7:15387506 Sed09g0640 Sed-Chr9:8056951 2.10E-126 dispersed
Sed09g0553 Sed-Chr9:5786494 Sed09g0640 Sed-Chr9:8056951 7.50E-104 dispersed
Sed09g0554 Sed-Chr9:5786811 Sed09g0640 Sed-Chr9:8056951 7.10E-104 dispersed
Sed09g0640 Sed-Chr9:8056951 Sed13g1978 Sed-Chr13:24651383 4.70E-116 dispersed
Sed09g0640 Sed-Chr9:8056951 Sed13g1977 Sed-Chr13:24651383 4.70E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
Vvi7g199 Blo05g00334 Blo06g00476 Bda04g00584 Bda10g00606 . Bpe06g00492 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0684 Cone11ag0873 . . . . . . . . Bpe10g00440 . Bma09g00709 Bma15g00556 Sed09g0640 . . . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . . . .
Vvi15g844 . . . . Bpe14g00988 . . . . . Cma06g01073 Cma14g02045 . Car14g01852 . . Cpe03g01736 Bhi01g00345 . . . . . . Cla05g00160 Cam05g0175 Cec05g0173 Cco05g0184 Clacu05g0172 Cmu05g0164 Cre05g0228 Cone14ag0368 Cone15ag0405 . . Lsi05g02048 . . Cme06g00171 Blo02g00363 . . Bda13g00342 . . Bma02g01053 . Sed09g0640 . Cmo14g02109 . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . Csa03g00884 Chy06g00163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39547 PF00176 SNF2_N 1.60E-70 CL0023 Sed TR