Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0662 ATGGCTCCAACTCCCTCTTGTAAATCAAACCACCAATGTCACAACCCCCAATTGAGAACTCCTCAATCCAAGCGCCTCAATTTCAACCCCCATTCCGAGCACCCTGTCGAAGTAATCGGCCGGATTCGAGACCACCCAGACAGGAAAGACAAGCCGGTCTCGATCCTCCAGATCAATCCCGATGCCCCAAGCGTTGTTCGGGTTCGGGCTGATTTTGGGTACCGAGATTTCAGCCTCGACGGGGTTTCTCTGTCGGAGGATGAAGATCTGGACGCATTTTACAAGAAGTTCGTCCAGGCCAGGATTCACGGGGTTAAGTCCGGGGAGAAATGTACTGTCATGATGTACGGACCCACCGGGGCCGGCAAGAGTCATACCATGTTTGGCTGTGCTAAGCAGCCCGGGATCGTGTACCGGTCGCTGAAGGACATTTTGGGGGACGGCGAAGGCGAAGGGGGCGGGGTTGGGATGTTTGTGCAAGTTACTGTGTTGGAGATTTATAATGAGGAATTGTATGATCTTCTTTCGAGTAATTCTGGTGGAGGGTTGGGGCTTGGCTGGCCTAAGGGAGGAAGTGCTTCTAAGGTGAAGCTTGAAGTGATGGGTAAGAAGGCAAAGAATGCTACTTATCTATCTGGGAATGAAGCAGGAAAGATTTCAAAAGAGATTCAAAAAGTGGAGAAAAGAAGGATTGTTAAAAGTACTCTTTGTAATGAAAGAAGCTCCAGAAGCCATTGCATGATAATTCTCGATGTGCCAATGGTCGGTGGGCGCCTAATGCTTGTCGATATGGCTGGTTCTGAAAATATAGAGCAAGCTGGGCAAGTTGGACTTGAGGCCAAAATGCAGACAGCAAAGATTAATCAAGGTAACATTGCACTGAAAAGAGTGGTTGAATCAATTGCCAATGGTGATTCTCATGTGCCTTTCAGAGACAGTAAATTGACTATGCTTTTGCAGGATTCTTTTGAGGATGATAAATCCAAAATTCTGATGATTCTGTGTGCCAGCCCTGATCCAAAAGAATTACACAAGACAATATCTACTCTTGAATATGGTGCAAAAGCCAAATGCATTGTTCGTGGTACGCATACGCCAACAAAGGATAAATTTGGCACTGATGATTCTGCTTCTGCTGTTCTTCTCGGATCGAGAATTGCAGCGATGGACGATTTCATATTCAAGTTACAAAAGGAGAACAAACTCAGAGAGAAAGAGCGAAATGAGGCACATAGAGAGCTCATGAAGAAAGAAGAAGAGGCAGCACAATTGAGAGCTAAGCTTGAGCAAGCGGGGTCGAGAGGATCGGGCGCGAGCGAGGAAGAGATCAATGTGAAGGTGAAAGAGAGAACGCAACTTGTAAAGCTTGAGTTGGAGAGGAAACTGGAGGAATGCCAGAGAATGGCTAATGAGTTTGTTGAATTGGAAAAGAGAAGGATGGAAGAGAAGATACTGCAGCAGCAACAAGAAGTCGAAATGCTGAGACGACGGCTGGAAGAGATCGAATCCGAGCTATTGAATTCAAGGGATGCTCGACCAACGAGCAATGATGTAAACAGATCAAGGGACATGGATGGCTGCAGGTTTGCTAGAAGGCTCTTAGGAGTCTATGCTAGTGCAGATGCAGGGATGGTTAAGTCCATGGACTTAGACATGGACGATCAAGAACCGATTCACGAAGTGAAACTCATTGGCGGAGGTATGGATTATCAACCAACTTCCAACAGCAGTATCCAAAGCTTACTAGATACAGTGAATCAGACAGTTGATCACGATGTATTTTCATCGCGGTTTGGGGACGGGGATAGAGTATGCCTGAGTACCGTGTTCGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGAAGGAAGTAATAGAAGAAAAGAGAATAGTGAGTACAGTTAAAGGACTCGCCGAATCGACACCGAATGTAATGAACAGAAGTCAGAACAAAGAAGAATTTCTCAAGGAGAGATCAGAGATCGGTATCGGATTGATAAACGACAACGAATCCAAGGACACCGCATTCTCAAGAAAACTAAGAATTCAAAATATATTTACTCTTTGTGGAAACCAGAGAGAGCTTTCGCAACAAGTAGTTGCCCCAACGCCTGAAAAGAAGAGACATGAAGATGATGAAAATCAACAGCTATCTCCATTGAAAACAATTGGAGAAGTTCATTATAGTCAAATTCTATCAGACCTGACGAATCAGAATGGAGGTGTATTAGAAGAGAATGAAGAGACAATGCAACCTATAAAGCTAGCAGCAAAGGGTGGAGTAAACAGCCCAGGTATTGTACCATTGAGTCCAATTCTATTGTGCTCAAAGGAGAACAAGCTACCCGTCACGCCCAACGTCGTATCGCAGCAAGGCAATGGCCTATCGCCGAGGTTCACTGCCACACCGCTCATCACTGTAAGAAGAAATTAA 2430 45.47 MAPTPSCKSNHQCHNPQLRTPQSKRLNFNPHSEHPVEVIGRIRDHPDRKDKPVSILQINPDAPSVVRVRADFGYRDFSLDGVSLSEDEDLDAFYKKFVQARIHGVKSGEKCTVMMYGPTGAGKSHTMFGCAKQPGIVYRSLKDILGDGEGEGGGVGMFVQVTVLEIYNEELYDLLSSNSGGGLGLGWPKGGSASKVKLEVMGKKAKNATYLSGNEAGKISKEIQKVEKRRIVKSTLCNERSSRSHCMIILDVPMVGGRLMLVDMAGSENIEQAGQVGLEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKELHKTISTLEYGAKAKCIVRGTHTPTKDKFGTDDSASAVLLGSRIAAMDDFIFKLQKENKLREKERNEAHRELMKKEEEAAQLRAKLEQAGSRGSGASEEEINVKVKERTQLVKLELERKLEECQRMANEFVELEKRRMEEKILQQQQEVEMLRRRLEEIESELLNSRDARPTSNDVNRSRDMDGCRFARRLLGVYASADAGMVKSMDLDMDDQEPIHEVKLIGGGMDYQPTSNSSIQSLLDTVNQTVDHDVFSSRFGDGDRVCLSTVFEEEAEEEEEEKEVIEEKRIVSTVKGLAESTPNVMNRSQNKEEFLKERSEIGIGLINDNESKDTAFSRKLRIQNIFTLCGNQRELSQQVVAPTPEKKRHEDDENQQLSPLKTIGEVHYSQILSDLTNQNGGVLEENEETMQPIKLAAKGGVNSPGIVPLSPILLCSKENKLPVTPNVVSQQGNGLSPRFTATPLITVRRN 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8690095 8694737 - Sed0025447.1 Sed09g0662 725426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0662 809 ProSiteProfiles Kinesin motor domain profile. 35 359 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed09g0662 809 MobiDBLite consensus disorder prediction 1 33 - -
Sed09g0662 809 SMART kinesin_4 33 367 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed09g0662 809 MobiDBLite consensus disorder prediction 1 29 - -
Sed09g0662 809 Coils Coil 448 511 - -
Sed09g0662 809 PANTHER KINESIN-RELATED 36 693 IPR027640 GO:0003777(InterPro)|GO:0003777(PANTHER)|GO:0005871(PANTHER)|GO:0005874(PANTHER)|GO:0007018(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0016887(PANTHER)
Sed09g0662 809 Coils Coil 607 627 - -
Sed09g0662 809 Coils Coil 400 434 - -
Sed09g0662 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 366 IPR027417 -
Sed09g0662 809 PRINTS Kinesin heavy chain signature 308 329 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed09g0662 809 PRINTS Kinesin heavy chain signature 108 129 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed09g0662 809 PRINTS Kinesin heavy chain signature 235 252 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed09g0662 809 PRINTS Kinesin heavy chain signature 258 276 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed09g0662 809 Pfam Kinesin motor domain 75 359 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed09g0662 809 Gene3D Kinesin motor domain 10 364 IPR036961 -
Sed09g0662 809 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 17 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0662 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0662 Sed-Chr9:8690095 Sed08g2328 Sed-Chr8:36652398 2.50E-29 dispersed
Sed09g0660 Sed-Chr9:8506095 Sed09g0662 Sed-Chr9:8690095 0.00E+00 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g735 . . . . . Bpe14g01265 . . Cmo08g01050 Cmo17g00152 . . . . . . . . . . . . . . . . . . . . . Cone14ag0161 Cone15ag0172 . Cone4ag0340 . Csa02g01048 . . Blo02g00696 . . Bda13g00053 . . . . Sed09g0662 . . Cma08g01075 Cma17g00153 Car08g00947 Car17g00135 Cpe12g00130 Cpe17g00203 Bhi12g01600 Tan06g2394 Cmetu05g0124 . . . Lcy13g0389 . . . . . . . . . . Cme05g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39