Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0671 ATGGAAGCTACTAGGCGTTGGTTTAATAAATTCAAATCCAAAGACAAGCCAAAGCCCTCGACAAAAAAAGAGAATACGGGCAATGCAAGAGATGCATCAAAACCACCAACTGGTGAAGAGGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGAACTGGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAGGAAGAGCAAAGCAACCTGCTTAAGAATCTAGAGAAGAAGGAAAGGGAATATATGCGTCTTCAGAGGCATAAAATGGATGCTGGTGATTTCGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTATGTCGAGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAACTTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGTTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACAGAAGACGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAACTATATTCATAGAGATATCAAGCCTGACAACTTGCTTCTTGATAAGGATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTTAGTGGTGCTCTTCAAAGTGATGGACGTCCTGTGGCATCAAAACGCACACAACAGGAGCAGCTACAGCATTGGCAAAGGAACAGGCGGATGCTTGCTTATTCTACAGTCGGAACTCCTGATTATATTGCTCCGGAAGTTTTGCTGAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCACTGGGTGCTATCATGTATGAAATGCTTGTGGGATTTCCTCCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAACTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGTATTGAGTGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACTCAATTCAGACGTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCAAAGGATATCAATTTCGTTGGTTATACATACAAAAACGTCGAAATCATTGATGGTAATCAACTGCCTGGAATCGCTGAACTGAAGAAGAAGAACACCAAACCTAAAAGACCTTCTATCAAATCTCTTTTCGATAACGAATCTGCAATGGCGCCGAATCAACCTGTTCAAGGCAGCTTTTTGAAACTCTTGCCTCCCCAACTAGAAGTCCCCGAGGAGCCCGTAAATGCCAATGAGAAGCGTTCGTGA 1659 41.35 MEATRRWFNKFKSKDKPKPSTKKENTGNARDASKPPTGEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHELEKKLADAEVSQEEQSNLLKNLEKKEREYMRLQRHKMDAGDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENSIQTSSKSGPWRKMLSSKDINFVGYTYKNVEIIDGNQLPGIAELKKKNTKPKRPSIKSLFDNESAMAPNQPVQGSFLKLLPPQLEVPEEPVNANEKRS 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9007675 9014211 - Sed0001817.1 Sed09g0671 725435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0671 552 MobiDBLite consensus disorder prediction 1 29 - -
Sed09g0671 552 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524(InterPro)
Sed09g0671 552 MobiDBLite consensus disorder prediction 62 87 - -
Sed09g0671 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 483 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed09g0671 552 CDD MobB_NDR_LATS-like 53 114 - -
Sed09g0671 552 MobiDBLite consensus disorder prediction 62 89 - -
Sed09g0671 552 Pfam Protein kinase domain 315 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0671 552 Pfam Protein kinase domain 121 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0671 552 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0671 552 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0671 552 SMART pkinase_C_6 419 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0671 552 MobiDBLite consensus disorder prediction 1 50 - -
Sed09g0671 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0671 552 FunFam Non-specific serine/threonine protein kinase 203 270 - -
Sed09g0671 552 Coils Coil 61 112 - -
Sed09g0671 552 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0671 552 MobiDBLite consensus disorder prediction 519 552 - -
Sed09g0671 552 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Sed09g0671 552 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Sed09g0671 552 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Sed09g0671 552 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Sed09g0671 552 CDD STKc_NDR_like 118 482 - -
Sed09g0671 552 SUPERFAMILY Protein kinase-like (PK-like) 95 471 IPR011009 -
Sed09g0671 552 SMART serkin_6 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1995 Sed-Chr4:34492292 Sed09g0671 Sed-Chr9:9007675 4.20E-302 dispersed
Sed04g1996 Sed-Chr4:34492292 Sed09g0671 Sed-Chr9:9007675 4.20E-302 dispersed
Sed09g0671 Sed-Chr9:9007675 Sed09g1040 Sed-Chr9:33812872 1.60E-240 dispersed
Sed04g1994 Sed-Chr4:34492292 Sed09g0671 Sed-Chr9:9007675 4.20E-302 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79756 PF00069 Pkinase 1.00E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0671 K08790 - csv:101205120 1035.4