Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0686 ATGAATTATTCATTCTTTCACTCCCAAAACTCCGATTTCTCGCCGGAATCCTCATTCAGCTCATTCGAATCGCTCCGATGGGAAGGATTTCAAATCAACGACGAATCTCTGCCCTTCAACGAGAATGATTCCGACGAAATGCTCCTCCACAGCATGATCTCCGAGGCCGCCGTGCACCCGCCTGAGAATTCTCTCCGGCGAGCTCCGCCGAAGGACGAGGAGGTGGATTCGCCGGGAGAAGAAGAACCCCACAAGACCAAATCCTACCGAGGAGTCCGCCGCCGGCCGTGGGGGAAATTCGCGGCGGAGATCCGGGATTCGACCCGGCATGGGGTTCGGGTTTGGCTCGGGACGTTCGACAGCGCCGAGGCGGCCGCGTTGGCCTACGATCAAGCCGCTTTCTCGATGCGCGGCGCCGCGGCCGTGCTGAATTTCCCGGTGGAAAGAGTGAAGGAATCGCTCAAGGAGATGGAGATGATGAGCTCCGCCGCGGACGGCGGGGACGGCGACGGCGACGGCGGGTCTCCGGTGGTGGCGTTGAAGAGAAAGCACTCGATGAGGAAGAAATTTAGTCGGAGAAAGAGTAAAGAGACATATGAAATTAAGAAAATGGAGAGTAATAATAATGTGGTGGTTTTGGAAGATCTTGGCCCTGATTATTTGGAACAACTTTTGGATTCGTCGGAGAATGTTTGGCAATCTCGACATAAGTTTTAA 717 54.53 MNYSFFHSQNSDFSPESSFSSFESLRWEGFQINDESLPFNENDSDEMLLHSMISEAAVHPPENSLRRAPPKDEEVDSPGEEEPHKTKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVKESLKEMEMMSSAADGGDGDGDGGSPVVALKRKHSMRKKFSRRKSKETYEIKKMESNNNVVVLEDLGPDYLEQLLDSSENVWQSRHKF 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9901087 9901986 - Sed0022196.1 Sed09g0686 725450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0686 238 MobiDBLite consensus disorder prediction 161 194 - -
Sed09g0686 238 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0686 238 PANTHER DNA-BINDING DOMAIN 46 191 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed09g0686 238 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0686 238 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0686 238 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0686 238 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Sed09g0686 238 MobiDBLite consensus disorder prediction 65 88 - -
Sed09g0686 238 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0686 238 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0686 238 MobiDBLite consensus disorder prediction 57 91 - -
Sed09g0686 238 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g0686 238 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0686 Sed-Chr9:9901087 Sed12g1030 Sed-Chr12:6648317 4.20E-57 dispersed
Sed09g0686 Sed-Chr9:9901087 Sed09g0690 Sed-Chr9:10057021 3.10E-20 proximal
Sed01g4313 Sed-Chr1:71258306 Sed09g0686 Sed-Chr9:9901087 1.20E-43 wgd
Sed12g1028 Sed-Chr12:6599697 Sed09g0686 Sed-Chr9:9901087 2.40E-20 wgd
Sed02g1402 Sed-Chr2:50207612 Sed09g0686 Sed-Chr9:9901087 1.40E-20 wgd
Sed04g1981 Sed-Chr4:34382617 Sed09g0686 Sed-Chr9:9901087 8.30E-22 wgd
Sed05g0107 Sed-Chr5:648617 Sed09g0686 Sed-Chr9:9901087 9.10E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39549 PF00847 AP2 1.20E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0686 K14516 - csv:101206564 318.931