Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0686 | ATGAATTATTCATTCTTTCACTCCCAAAACTCCGATTTCTCGCCGGAATCCTCATTCAGCTCATTCGAATCGCTCCGATGGGAAGGATTTCAAATCAACGACGAATCTCTGCCCTTCAACGAGAATGATTCCGACGAAATGCTCCTCCACAGCATGATCTCCGAGGCCGCCGTGCACCCGCCTGAGAATTCTCTCCGGCGAGCTCCGCCGAAGGACGAGGAGGTGGATTCGCCGGGAGAAGAAGAACCCCACAAGACCAAATCCTACCGAGGAGTCCGCCGCCGGCCGTGGGGGAAATTCGCGGCGGAGATCCGGGATTCGACCCGGCATGGGGTTCGGGTTTGGCTCGGGACGTTCGACAGCGCCGAGGCGGCCGCGTTGGCCTACGATCAAGCCGCTTTCTCGATGCGCGGCGCCGCGGCCGTGCTGAATTTCCCGGTGGAAAGAGTGAAGGAATCGCTCAAGGAGATGGAGATGATGAGCTCCGCCGCGGACGGCGGGGACGGCGACGGCGACGGCGGGTCTCCGGTGGTGGCGTTGAAGAGAAAGCACTCGATGAGGAAGAAATTTAGTCGGAGAAAGAGTAAAGAGACATATGAAATTAAGAAAATGGAGAGTAATAATAATGTGGTGGTTTTGGAAGATCTTGGCCCTGATTATTTGGAACAACTTTTGGATTCGTCGGAGAATGTTTGGCAATCTCGACATAAGTTTTAA | 717 | 54.53 | MNYSFFHSQNSDFSPESSFSSFESLRWEGFQINDESLPFNENDSDEMLLHSMISEAAVHPPENSLRRAPPKDEEVDSPGEEEPHKTKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVKESLKEMEMMSSAADGGDGDGDGGSPVVALKRKHSMRKKFSRRKSKETYEIKKMESNNNVVVLEDLGPDYLEQLLDSSENVWQSRHKF | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 9901087 | 9901986 | - | Sed0022196.1 | Sed09g0686 | 725450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0686 | 238 | MobiDBLite | consensus disorder prediction | 161 | 194 | - | - | |
Sed09g0686 | 238 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g0686 | 238 | PANTHER | DNA-BINDING DOMAIN | 46 | 191 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Sed09g0686 | 238 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g0686 | 238 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g0686 | 238 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g0686 | 238 | FunFam | Ethylene-responsive transcription factor 2 | 87 | 148 | - | - | |
Sed09g0686 | 238 | MobiDBLite | consensus disorder prediction | 65 | 88 | - | - | |
Sed09g0686 | 238 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g0686 | 238 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g0686 | 238 | MobiDBLite | consensus disorder prediction | 57 | 91 | - | - | |
Sed09g0686 | 238 | Pfam | AP2 domain | 88 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g0686 | 238 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g0686 | Sed-Chr9:9901087 | Sed12g1030 | Sed-Chr12:6648317 | 4.20E-57 | dispersed | |
Sed09g0686 | Sed-Chr9:9901087 | Sed09g0690 | Sed-Chr9:10057021 | 3.10E-20 | proximal | |
Sed01g4313 | Sed-Chr1:71258306 | Sed09g0686 | Sed-Chr9:9901087 | 1.20E-43 | wgd | |
Sed12g1028 | Sed-Chr12:6599697 | Sed09g0686 | Sed-Chr9:9901087 | 2.40E-20 | wgd | |
Sed02g1402 | Sed-Chr2:50207612 | Sed09g0686 | Sed-Chr9:9901087 | 1.40E-20 | wgd | |
Sed04g1981 | Sed-Chr4:34382617 | Sed09g0686 | Sed-Chr9:9901087 | 8.30E-22 | wgd | |
Sed05g0107 | Sed-Chr5:648617 | Sed09g0686 | Sed-Chr9:9901087 | 9.10E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39549 | PF00847 | AP2 | 1.20E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0686 | K14516 | - | csv:101206564 | 318.931 |