Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0722 ATGGCTCGGAACGGGCATGTAATGCCGGTGGATCCACTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTCGATTGTTCGGGCTCGGGGACCGTTCTCGATGTCGACAAGTATGCGATTATGCATCGGGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACCATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTTGAGCATATTAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCAACAGATGAGCTCGTCGTCCCCGTACTTGAGGAACTACAGAGGCGACTGCCTCCTTCTAATATCTTCCAGGATCAAATTCAAGAAGATGGGAAAGAGTATCAGGGTGGGCTACATGATGGTGAAGCTGAAGAAGATGAATCCCCATTTGAATTCCGTGCACTAGAGGTAGCTTTGGAATCTATATGTAGTTTTCTTGCTGCTCGCACAACTGAACTGGAAACTGCTGCTTATCCAGCTTTGGATGAACTTACTGCGAAGATTAGTAGCCGCAATTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCAAGGGTTCAAAAGGTAAGAGATGAGCTTGAGCAATTACTGGACGATGATGACGACATGGCAGACCTTTACTTGACAAGAAAGATGAGTTCATCTTCTCCTGTAAGTTGTTCTGGTCCTGCCAACTGGTTTCCTATCTCTCCTACCATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTATTGCAACTGTACATGGGGATGAGAATGACATCGAGCAGCTTGAAATGTTATTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACGAACTAACTACATTGCGAGAGTATATCGATGACACAGAAGATTATATCAATATCCAGCTCGACAATCATCGGAATCAACTCATTCAGTTGGAGCTGTTTCTAAGTTCTGGAACGGTTTGTCTGTCAGTCTATTCATTGGTGTGTGCAATATTTGGCATGAACATTCCGTACACTTGGAATGACAATCATGGATACATGTTTAAATGGGTTGTCATTGTTTCCGGAGTAGCCTGTGCTGTGCTGTTCGTCACAATTGTTTACTATTCTCGCCTCAAAGGTTTGGTGGGGTCTTGA 1167 44.04 MARNGHVMPVDPLKKKKQSSRNWILLDCSGSGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDELVVPVLEELQRRLPPSNIFQDQIQEDGKEYQGGLHDGEAEEDESPFEFRALEVALESICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLTRKMSSSSPVSCSGPANWFPISPTIGSKISRASRASIATVHGDENDIEQLEMLLEAYFMQIDGTLNELTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSVYSLVCAIFGMNIPYTWNDNHGYMFKWVVIVSGVACAVLFVTIVYYSRLKGLVGS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11925834 11943437 - Sed0027938.1 Sed09g0722 725486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0722 388 Gene3D - 6 94 - -
Sed09g0722 388 Gene3D Magnesium transport protein CorA, transmembrane region 100 318 - -
Sed09g0722 388 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 384 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed09g0722 388 FunFam Magnesium transporter MRS2-1 11 94 - -
Sed09g0722 388 Coils Coil 189 216 - -
Sed09g0722 388 CDD Mrs2_Mfm1p-like 23 385 IPR039204 -
Sed09g0722 388 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 324 376 IPR045863 -
Sed09g0722 388 Pfam Magnesium transporter MRS2-like 36 231 - -
Sed09g0722 388 Pfam Magnesium transporter MRS2-like 268 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0722 K16075 - - csv:101203841 655.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0722 Sed-Chr9:11925834 Sed13g0547 Sed-Chr13:3768900 1.40E-78 dispersed
Sed04g1953 Sed-Chr4:34210691 Sed09g0722 Sed-Chr9:11925834 3.40E-189 wgd
Sed05g0080 Sed-Chr5:431442 Sed09g0722 Sed-Chr9:11925834 1.80E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g2048 . 1 447 MRS2 Gene Family AT1G16010 83.4 1.6e-203 706.4
Sed05g1392 . 1 446 MRS2 Gene Family AT1G16010 82.3 8.2e-200 694.1
Sed03g2573 . 6 380 MRS2 Gene Family AT1G16010 53.1 8.7e-109 391.7
Sed04g1953 . 1 366 MRS2 Gene Family AT5G64560 80.2 1.3e-156 550.4
Sed09g0722 . 1 361 MRS2 Gene Family AT5G64560 79.6 1.3e-156 550.4
Sed05g0080 . 1 364 MRS2 Gene Family AT5G64560 70.2 1.4e-131 467.2
Sed05g2636 . 21 495 MRS2 Gene Family AT3G19640 66.5 1.3e-158 557.4
Sed10g1946 . 39 494 MRS2 Gene Family AT3G19640 66.7 5.7e-154 542.0
Sed04g1594 . 3 446 MRS2 Gene Family AT3G58970 65.8 1.4e-146 517.3
Sed13g0547 . 55 447 MRS2 Gene Family AT3G58970 68.0 2.7e-139 493.0
Sed13g0549 . 24 359 MRS2 Gene Family AT3G58970 66.8 2.6e-113 406.8
Sed13g0548 . 55 358 MRS2 Gene Family AT3G58970 65.3 7.3e-100 362.1
Sed13g0550 . 24 270 MRS2 Gene Family AT3G58970 62.9 6.9e-74 275.8
Sed03g2573 . 6 380 MRS2 Gene Family AT2G03620 67.9 5.7e-134 475.3
Sed06g2048 . 13 447 MRS2 Gene Family AT2G03620 53.0 5.6e-113 405.6
Sed05g1392 . 11 446 MRS2 Gene Family AT2G03620 53.4 3.6e-112 402.9
Sed04g1953 . 1 328 MRS2 Gene Family AT5G09690 74.7 4.4e-126 448.7
Sed09g0722 . 1 323 MRS2 Gene Family AT5G09690 73.2 3.8e-122 435.6
Sed05g0080 . 1 326 MRS2 Gene Family AT5G09690 65.7 4.1e-108 389.0
Sed05g1392 . 40 382 MRS2 Gene Family AT5G09690 51.3 2.6e-78 290.0
Sed04g1953 . 12 288 MRS2 Gene Family AT5G09720 65.5 4.3e-88 322.4
Sed09g0722 . 1 283 MRS2 Gene Family AT5G09720 64.2 7.4e-88 321.6
Sed05g0080 . 11 286 MRS2 Gene Family AT5G09720 56.9 6.7e-73 271.9
Sed06g2048 . 1 447 MRS2 Gene Family AT1G80900 82.1 1.2e-198 690.3
Sed05g1392 . 1 446 MRS2 Gene Family AT1G80900 81.4 5.5e-196 681.4
Sed03g2573 . 6 380 MRS2 Gene Family AT1G80900 53.0 4.8e-107 386.0
Sed03g1863 . 105 444 MRS2 Gene Family AT5G22830 83.2 3.4e-156 549.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58