Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0729 ATGTCTCAATCTCTACAACTTTTCACCTCCCCCACCACCGGCTCTCCGCCCATTTCTCTCTCAAAACCCCCCTCCACCGCCGCCGCCGCCTTCCGCTTCGCCTTTCCCAAATCCTCAATCAGAGCCTCTTCCTCTGAAAATGGCTCCAATTCCGGAAGTGGGGTTGTGGCTATTTCTGCTACTACCAAGGAGTTTGTGCCTGTTGTGTCCGATGCCAGCTCGATCGAGGTCGATACCGTAACAGAGGCCGAATTGAAGGAGAATGGGTTCAGGAGTACGAGGAGGACGAAACTGGTGTGTACTATTGGCCCTGCTACTTGCGGATTTGAGCAGCTTGAGGCGCTTGCTGTTGGTGGTATGAATGTTGCCAGGATCAATATGTGCCATGGGACGCGAGAGTGGCATCGGACCGTCATCGAACGCGTGCGGAGGCTTAATGACGAGAAGGGTTTTGCTGTGGCTATTATGATGGATACTGAAGGGAGTGAGATTCATATGGGTGATCTTGGTGGGGCTTCTTCGGCTAAGGCGGAAGATGGTGAAATATGGACGTTCAGTGTCAGAGCTTTTGATTCAACACTCCCTGAACGCACCATTAATGTGAACTATCAAGGATTTGCAGAAGATGTGAGAGTGGGTGATGACCTCCTTGTTGATGGTGGAATGGTGAGGTTCGAGGTAATCGAAAAGATTGGTCCTGATGTTAAGTGTCTGTGTACCGACCCAGGATTGTTGTTGCCACGGGCTAATTTAACGTTTTGGAGAGATGGACATCTAGTACGGGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTAGATATTGATTTTGGGATTGCTGAAGGAGTTGAATTTCTTGCCATATCATTTGTTAAGTCTGCTGAAGTGATTAAACATCTCAAAAGCTATATTGCAGCACGTTCTCGTGGCAGTGATATTTCCATCATTGCGAAGATAGAGAGTCTGGACTCATTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCTAAAGGTCGTCCAACTATGCAGGCAGTTAAACAAACCAGTTATTGTTGCTTCTCAGCTGCTTGAGTCGATGATCGAATACCCTACACCCACCAGAGCTGAAGTTGCCGATGTTTCCGAGGCCGTTAGGCAGCGGGCAGATGCTCTAATGCTCTCTGGTGAGTCTGCCATGGGCCAGTTCCCGGAAAAGGCATTGACTGTTTTGAGAAGTGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGACATGAAGCTATGGAACTCCCTGAAATTGGATCTTCATACTCAGATAGTATTTTAGAAGAGATCTGCAATTCAGCTGCCAAAATGGCCAATAATTTGGAGGTGGATGCAATTTTCGTATACACAAAGACAGGACACATGGCATCTCTCCTGTCCCGATGCCGACCCGATTGCCCAATCTTTGCGTTTACTTCCACGACATCTGTAAGGAGACGTCTTAACTTGCAATGGGGCCTGATACCATTCCGCGTGAGCTTCTCGGACGACATGGAAAACAACCTGAACAAAACATTCTTACTGCTTAAAGCCAGAAAGTTGATCAAATCAGGTGACCTTGTAATTGCTGTCTCAGACATGTTGCAGTCTATCCAAGCTATGAATGTTCCATAA 1722 47.1 MSQSLQLFTSPTTGSPPISLSKPPSTAAAAFRFAFPKSSIRASSSENGSNSGSGVVAISATTKEFVPVVSDASSIEVDTVTEAELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRTVIERVRRLNDEKGFAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYQGFAEDVRVGDDLLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVEFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQLKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPEKALTVLRSVSLRIEKWWRDEKRHEAMELPEIGSSYSDSILEEICNSAAKMANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRVSFSDDMENNLNKTFLLLKARKLIKSGDLVIAVSDMLQSIQAMNVP 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12542119 12549206 - Sed0002520.1 Sed09g0729 725493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0729 573 PANTHER PYRUVATE KINASE 74 563 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Sed09g0729 573 NCBIfam pyruvate kinase 94 562 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 76 440 IPR015813 GO:0003824(InterPro)
Sed09g0729 573 FunFam Pyruvate kinase 437 563 - -
Sed09g0729 573 SUPERFAMILY PK C-terminal domain-like 425 571 IPR036918 -
Sed09g0729 573 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Sed09g0729 573 Pfam Pyruvate kinase, alpha/beta domain 464 564 IPR015795 -
Sed09g0729 573 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 PRINTS Pyruvate kinase family signature 286 300 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 PRINTS Pyruvate kinase family signature 151 167 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 Gene3D - 437 563 IPR036918 -
Sed09g0729 573 MobiDBLite consensus disorder prediction 1 22 - -
Sed09g0729 573 FunFam Pyruvate kinase 269 436 - -
Sed09g0729 573 Pfam Pyruvate kinase, barrel domain 94 425 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Sed09g0729 573 FunFam Pyruvate kinase 162 268 - -
Sed09g0729 573 MobiDBLite consensus disorder prediction 1 23 - -
Sed09g0729 573 SUPERFAMILY PK beta-barrel domain-like 163 254 IPR011037 -
Sed09g0729 573 Gene3D - 94 436 IPR040442 -
Sed09g0729 573 Gene3D - 162 268 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0729 K00873 - - csv:101218017 989.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0971 Sed-Chr7:7139839 Sed09g0729 Sed-Chr9:12542119 8.70E-101 dispersed
Sed09g0729 Sed-Chr9:12542119 Sed13g0097 Sed-Chr13:653614 3.60E-99 dispersed
Sed13g0418 Sed-Chr13:2756284 Sed09g0729 Sed-Chr9:12542119 1.80E-162 transposed
Sed04g1943 Sed-Chr4:34096051 Sed09g0729 Sed-Chr9:12542119 1.40E-284 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38