Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0734 ATGAGTGCCGGCGCGGCCACGTTCCGGTCTATTCTCGATAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGTGAAGATTGTCGCAAATACCTAAAGGAAAAAGGAATGCGGCGGCCGTCGTGGAACAAATCTCAGGCGATCCAACAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCACTGCTCTTAGGAAGGTCGTCATTTCGCCTCCGGTGAACTCAAATCAAGACGACTCACCCAGAGAACCGAGTGATGATGCTCAGGTTACGGTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACAGGCTGAACCAGACCACAAGGTCCCCAGTCCCAGAGATCAATGCGATACAGATCAAGTGGATGGCCAAATGACAATTTTCTATTGCGGGAAGGTGAATGTGTATGATGGAGTTCCACCCGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACGTTGTCTTTTGCAGACTGCCCATGAGAGAGACGACTTTATTGCTCCTAGTGCCCCTATCTATCGTAATATGCATACAGAGAAGGTGGTTGAGTACCCTCAGCAGCTGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGCAAGTTTCGTTACAGAGATATCTTGAAAAGCGAAAGGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGTCTTGAGGGGTATATGAACCATCACGTGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGGGACAAGCTCTTTATCCCCTACTGGAGTAGCAAACGCCTTCGTCGGAACAGCTGACAATCTGCCAAAACTTGCATGTTTTCCGGTCGACCTGAATGTCAAAGATACCCAGGAGTGCTGA 1011 47.87 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGATALRKVVISPPVNSNQDDSPREPSDDAQVTVSVDESAYSNVETAKSTPEDPQAEPDHKVPSPRDQCDTDQVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHHPLGGTAACQSPRCLLQTAHERDDFIAPSAPIYRNMHTEKVVEYPQQLHVKGTSTRDSDVEGQASRQVSLQRYLEKRKDRGRLKNKKNTGLSSSSLEGYMNHHVRTHISNKNLGQIGTSSLSPTGVANAFVGTADNLPKLACFPVDLNVKDTQEC 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12767038 12772739 - Sed0024780.1 Sed09g0734 725498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0734 336 MobiDBLite consensus disorder prediction 78 138 - -
Sed09g0734 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 261 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Sed09g0734 336 SMART tify_2 138 173 IPR010399 -
Sed09g0734 336 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Sed09g0734 336 MobiDBLite consensus disorder prediction 259 279 - -
Sed09g0734 336 Pfam Jas motif 245 261 IPR018467 -
Sed09g0734 336 MobiDBLite consensus disorder prediction 95 117 - -
Sed09g0734 336 MobiDBLite consensus disorder prediction 119 135 - -
Sed09g0734 336 Pfam tify domain 144 172 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1936 Sed-Chr4:34032431 Sed09g0734 Sed-Chr9:12767038 2.80E-155 dispersed
Sed09g0734 Sed-Chr9:12767038 Sed09g0736 Sed-Chr9:12767038 3.30E-169 dispersed
Sed09g0734 Sed-Chr9:12767038 Sed09g0735 Sed-Chr9:12767038 7.20E-148 tandem
Sed04g1935 Sed-Chr4:34032431 Sed09g0734 Sed-Chr9:12767038 5.90E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39557 PF06200 tify 3.00E-15 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0734 - - - 0.0