Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0735 ATGAGTGCCGGCGCGGCCACGTTCCGGTCTATTCTCGATAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGTGAAGATTGTCGCAAATACCTAAAGGAAAAAGGAATGCGGCGGCCGTCGTGGAACAAATCTCAGGCGATCCAACAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCACTGCTCTTAGGAAGGTCGTCATTTCGCCTCCGGTGAACTCAAATCAAGACGACTCACCCAGAGAACCGAGTGATGATGCTCAGGTTACGGTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACAGGCTGAACCAGACCACAAGGTCCCCAGTCCCAGAGATCAATGCGATACAGATCAAGTGGATGGCCAAATGACAATTTTCTATTGCGGGAAGGTGAATGTGTATGATGGAGTTCCACCCGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACGTTGTCTTTTGCAGACTGCCCATGAGAGAGACGACTTTATTGCTCCTAGTGCCCCTATCTATCGTAATATGCATACAGAGAAGGTGGTTGAGTACCCTCAGCAGCTGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGCAAGTTTCGTTACAGAGATATCTTGAAAAGCGAAAGGACAGGATTGTCTTCTTCTAG 798 48.62 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGATALRKVVISPPVNSNQDDSPREPSDDAQVTVSVDESAYSNVETAKSTPEDPQAEPDHKVPSPRDQCDTDQVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHHPLGGTAACQSPRCLLQTAHERDDFIAPSAPIYRNMHTEKVVEYPQQLHVKGTSTRDSDVEGQASRQVSLQRYLEKRKDRIVFF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12767038 12772739 - Sed0024780.2 Sed09g0735 725499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0735 265 MobiDBLite consensus disorder prediction 78 138 - -
Sed09g0735 265 SMART tify_2 138 173 IPR010399 -
Sed09g0735 265 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Sed09g0735 265 Pfam tify domain 144 172 IPR010399 -
Sed09g0735 265 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 263 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Sed09g0735 265 Pfam Jas motif 245 263 IPR018467 -
Sed09g0735 265 MobiDBLite consensus disorder prediction 95 117 - -
Sed09g0735 265 MobiDBLite consensus disorder prediction 119 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0735 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0734 Sed-Chr9:12767038 Sed09g0735 Sed-Chr9:12767038 7.20E-148 tandem
Sed09g0735 Sed-Chr9:12767038 Sed09g0736 Sed-Chr9:12767038 5.20E-125 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39558 PF06200 tify 2.20E-15 No_clan Sed TF