Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g0735 | ATGAGTGCCGGCGCGGCCACGTTCCGGTCTATTCTCGATAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGTGAAGATTGTCGCAAATACCTAAAGGAAAAAGGAATGCGGCGGCCGTCGTGGAACAAATCTCAGGCGATCCAACAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCACTGCTCTTAGGAAGGTCGTCATTTCGCCTCCGGTGAACTCAAATCAAGACGACTCACCCAGAGAACCGAGTGATGATGCTCAGGTTACGGTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACAGGCTGAACCAGACCACAAGGTCCCCAGTCCCAGAGATCAATGCGATACAGATCAAGTGGATGGCCAAATGACAATTTTCTATTGCGGGAAGGTGAATGTGTATGATGGAGTTCCACCCGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACGTTGTCTTTTGCAGACTGCCCATGAGAGAGACGACTTTATTGCTCCTAGTGCCCCTATCTATCGTAATATGCATACAGAGAAGGTGGTTGAGTACCCTCAGCAGCTGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGCAAGTTTCGTTACAGAGATATCTTGAAAAGCGAAAGGACAGGATTGTCTTCTTCTAG | 798 | 48.62 | MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGATALRKVVISPPVNSNQDDSPREPSDDAQVTVSVDESAYSNVETAKSTPEDPQAEPDHKVPSPRDQCDTDQVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHHPLGGTAACQSPRCLLQTAHERDDFIAPSAPIYRNMHTEKVVEYPQQLHVKGTSTRDSDVEGQASRQVSLQRYLEKRKDRIVFF | 265 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 12767038 | 12772739 | - | Sed0024780.2 | Sed09g0735 | 725499 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g0735 | 265 | MobiDBLite | consensus disorder prediction | 78 | 138 | - | - | |
| Sed09g0735 | 265 | SMART | tify_2 | 138 | 173 | IPR010399 | - | |
| Sed09g0735 | 265 | ProSiteProfiles | Tify domain profile. | 138 | 173 | IPR010399 | - | |
| Sed09g0735 | 265 | Pfam | tify domain | 144 | 172 | IPR010399 | - | |
| Sed09g0735 | 265 | PANTHER | PROTEIN TIFY 4A-RELATED-RELATED | 20 | 263 | IPR040390 | GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER) | |
| Sed09g0735 | 265 | Pfam | Jas motif | 245 | 263 | IPR018467 | - | |
| Sed09g0735 | 265 | MobiDBLite | consensus disorder prediction | 95 | 117 | - | - | |
| Sed09g0735 | 265 | MobiDBLite | consensus disorder prediction | 119 | 135 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed09g0734 | Sed-Chr9:12767038 | Sed09g0735 | Sed-Chr9:12767038 | 7.20E-148 | tandem | |
| Sed09g0735 | Sed-Chr9:12767038 | Sed09g0736 | Sed-Chr9:12767038 | 5.20E-125 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39558 | PF06200 | tify | 2.20E-15 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g0735 | - | - | - | 0.0 |