Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0760 ATGGAAGTGGCGTGGAATCAAGTGAAGCTCTACGATTTTCTTCGAACTCCTGAGGATCTGGAACGGCTGTACAGAGAAATCCATTTGTTAAAGGCTCTAAAACACAACAACATAATGAAATTCTGTTCTTCTTGGGTCGACACTGGCAACAGAAACATTAACTTTGTGACAGAGATGTTCACTTCTGGAACACTTCGACAATACAGGCTGAAGCACAAGAGAGTCAACATGAGAGCTGTGAAGCATTGGTTCAGACAGATTTTGAAAGGCCTTCATTATCTTCACAGCCATGATCCTCCTGTAATCCATAGAGATCTTAAATGTGATAACATTTTTGTTAACGGGAATCAAGGGGAAGTCAAGATTGGTGATCTTGGCCTTGCTGCTATTCTTCTCAAACCCTATGTTGCTCGTTGTGTTGGAACGCCTGAGTTTATGGCACCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATCTATTCATTTGGAATGTGTATTTTGGAAATGGTTACTTTTGAATATCCATACAGTGAATGCAACCACCCTGCTCAGATTTACAAGAAAGTTATTTCTGGGATGAAACCAGATGCTTTGTATAAGGTGAAGGACCTCGAGGTTCGGTGTTTCGTTGAGAAATGCTTGGCTACTGTATCAGCAAGGCCCTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGCTATAATTCCTTGCTGGGGCCAATGGACTACTATTCAGAATATGCTGAAGTGAAAAACTCTCTTATTAGAGGGCCTCTTTATGGTCCTTTGGGTAATGGGTATGTGAATTATTATGGTAATGAAGCTGGGAATGTTTTGGATTACTGTCTGATCGCTATCGAAGCGGGCAAGATTGATCTTTTCTCTTGTCAAGAGGATGAGCATCTGGCCGATGCTGATATCACTATTAAAGGGAGAAGGAGAGGCGACGACGATGTATTTCTACGACTACGAATTGCAGATAAAGAAGATCGGTTTCGAAACATCTACTTCCCTTTTGATTTGGAGAATGACAGTGCTTTGAGTGTTGCAAATGAGATGGTTTCTGAGCTTGACATTACTAATCAAGATGTGAAGATGATTGCTGATATGATTGATGGGGAAATTGCTACATTGGTTCCAGAATGGAAGAGGGGAATAACCTTAGAGGAAACTTCAGATTGCACTGATTCTAATGTTTGTCACAGTTGTGCTTTAAATAGTAATCTCTTTAATCATGTTTCGACGCATAATCCCACGACGAAGAACCTGCACATTCTTCAGTGTTCTGAAGAGAATGGCTGTGCTTCCATCCATGGCCGTTTTGAAGAGATCACATATCAAATTGAAGGGTCTGAACAGGTCAATGGAGACGAAAACTTGCATCAAACATCAGAGAATTTGAGCGATATTCATTACGCCGATATTTGGGCACAACGAGATGGACCAGAGGTAATTTCTCATGAATCTAGAGAGGTTAGTTGCGGTGAATCACATGGAACATCGGAGCAGCCGAAACTCGAGAAGGATGGAAGAATTGTAAATGTGGACAATCATCAAACAGAACACCAAAGAAGAAACTCTAGCTCATCGAATCCTTCAGCGTCCTTCACCGAAGATCATGAGAACGAAATCCGACAAGAACTCAGATGGCTCAAGGCTAAATATCAATTGCAGTTGAGGGAGCTAAGGGATCAACAATTAGGAGTCAAAACCAAATCTCTAAGCTTGCACCCGAATCCCAACCTCGTCGAGGCCGACATTGGAGCTTCAATTTCATTGCTCTCACCAAACGTCAATGAAGCAAAAAATAGGGATCTCCTAGCATCTCTCTCCTTTGGCAAGAACATCACTTCACATTCCACCCATGTCACTGGTAACATTTCGGAAAATGCCGAAAATGAAAACGGATCGAGTAGTCCTGAGCTGATGTTCACAGCCAAGAGTTTCTACACAGGAACATTGCTTCCACATTCTCTTCAAAGAGCAACCTCCCTTCCAGTTGATGCCATAGATTTTTAG 2034 41.64 MEVAWNQVKLYDFLRTPEDLERLYREIHLLKALKHNNIMKFCSSWVDTGNRNINFVTEMFTSGTLRQYRLKHKRVNMRAVKHWFRQILKGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILLKPYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVISGMKPDALYKVKDLEVRCFVEKCLATVSARPSARELLNDPFLQIDGYNSLLGPMDYYSEYAEVKNSLIRGPLYGPLGNGYVNYYGNEAGNVLDYCLIAIEAGKIDLFSCQEDEHLADADITIKGRRRGDDDVFLRLRIADKEDRFRNIYFPFDLENDSALSVANEMVSELDITNQDVKMIADMIDGEIATLVPEWKRGITLEETSDCTDSNVCHSCALNSNLFNHVSTHNPTTKNLHILQCSEENGCASIHGRFEEITYQIEGSEQVNGDENLHQTSENLSDIHYADIWAQRDGPEVISHESREVSCGESHGTSEQPKLEKDGRIVNVDNHQTEHQRRNSSSSNPSASFTEDHENEIRQELRWLKAKYQLQLRELRDQQLGVKTKSLSLHPNPNLVEADIGASISLLSPNVNEAKNRDLLASLSFGKNITSHSTHVTGNISENAENENGSSSPELMFTAKSFYTGTLLPHSLQRATSLPVDAIDF 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14561273 14565090 + Sed0005253.2 Sed09g0760 725524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0760 677 Gene3D - 323 413 - -
Sed09g0760 677 SMART serkin_6 11 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0760 677 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0760 677 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Sed09g0760 677 Pfam Protein kinase domain 18 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0760 677 MobiDBLite consensus disorder prediction 491 545 - -
Sed09g0760 677 SUPERFAMILY Protein kinase-like (PK-like) 12 235 IPR011009 -
Sed09g0760 677 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 326 380 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed09g0760 677 Coils Coil 550 570 - -
Sed09g0760 677 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 570 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed09g0760 677 CDD STKc_WNK 1 234 - -
Sed09g0760 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0760 677 MobiDBLite consensus disorder prediction 491 528 - -
Sed09g0760 677 FunFam probable serine/threonine-protein kinase WNK9 60 239 - -
Sed09g0760 677 Gene3D Transferase(Phosphotransferase) domain 1 60 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1904 Sed-Chr4:33788917 Sed09g0760 Sed-Chr9:14561273 5.9e-314 dispersed
Sed09g0760 Sed-Chr9:14561273 Sed11g0251 Sed-Chr11:2244660 5.30E-190 dispersed
Sed09g0759 Sed-Chr9:14561273 Sed09g0760 Sed-Chr9:14561273 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79759 PF00069 Pkinase 1.40E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0760 K08867 - csv:101210511 1072.38