Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g0770 | ATGTTGCCGAACCAGCTTCAAAATGGGATGGGCAGGGCGAAGAACATGTGGTCTCGCCTTCCCTACAACGAGGAGGACGAGGACGACCATCTTAGTTTCTTGAAGAAGAATGATGGGGGCGGCGTCGAGAGCCTTGATTACGAGGTTATCGAGAATTATGCTTACTGGGATGAACAGGTACTTCCATTTGTTGAGATTTTCCATGATTATGATTGGTTACTTCAATCTTCCATCTTTATTTGGAAATTATTTATTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGCTTATTGGTATTGGTACAGGATTGGCTGCAGTTTTCATAAATATAGCCGTTGAGAACTTTGCTGGCTGGAAATTTTCGTTGACATTTTCCTTAATTCAAAAGTCATACGTGGCTGGTTTTATAGTATACTTGGCAATCAACTTGATTCTAGTATTGTCATCTGTATATATAGTTGTCCACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTATCCTTTTCTTCAGAACCCTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTATGCAAGGAAGGGTTTCTCAAAGGAGGATCTGGTAAATATCATCTTAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCATGATCTTGTCACCTGTGGGTGTGCAGCTGGAGTTGCTGCAGCTTTTAGAGCTCCGGTTGGCGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTATTTTTTACTTCTGCTGTGGTGGCTGTGGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGAAAGTGTGGACATTTTGGTTCTGGTGAGGACTACTCGTTTGGCGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGTGCACTATTCAACCAGCTTACTCTTTACATGACTTATTGGCGACGAAACTATTTGCACAAGAAGGGGAACCGAGTCAAGATCATTGAGGCTTGTCTCATATCAGTAGTAACATCAATCATTTCCTTTGGACTACCACTTCTGAGGCAATGTACTCCATGCCCCAAACCTGATCCTGAATTGGGTAATGAATGCCCAAGGCCTCCAGGAATGTATGGGAATTATGTCAATTTTTACTGCAGTAAGGAAAATGAATACAATGACCTTGCAACCATCTTCTTCAACACCCAGGTTTTTCATGATGCCATAAGGAATTTGTTCAGTGCCAAAACAATGCATGAATTCAGTGCACGGAGTTTATTGACCTTTCTGGTTATGTTTTATACCTTAGCTGTCGTGACATTTGGTACTGCAGTTCCTGCTGGTCAATTTGTACCTGGTATAATGATTGGATCTACATATGGACGTTTGGTCGGCAAGTTTGTAGTTAGTTTCTACAAGAAACCCAACATTCAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCTTTTCTTGGAGGTTCTATGCGAATCACAGTGTCTCTATGTGTTATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCCCTAATCATGCTTGTCCTTCTAATTTCCAAGGCTGTTGGCGATGCCTTCAATGAAGGCCTATATGAAGAACAGGCTCAATTGAAAAGTATTCCATTTCTGGAATCAAGACCAAAGTACCAGATGCGTAAAATTACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCCCTCCCTCGTGTTGTTAAGGTTGCTGATGTTGTTAGTATTTTGCAGAGCAACAGACATAAGGGCTTTCCTGTGGTTGATTCCTCTAGAAATGGAGAAACGCGTGTAATTGGACTGATACTTAGAAGTTACTTGTTAGGACTTCTACAGTCTAAAGTAGATTTTCAGCACAGTCCTTTGCCTTCTGATCCAAGAGGTTCCATACCAAGCAGGCATAATTTCAGTGAATTTGTGAAGCCTGCTTCTAGTAGAGGAATATCTATTGATGATATACACCTTAATTCAGAAGATTTGGAAATGTACATAGATCTACTCCCATATCTGAACCCATCTCCATATATTGTCCCAGAAGATATGTCTTTGACAAAGGTGTATAACCTTTTCCGGCAACTAGGTCTGAGACATGCATTTGTTGTTCCCCGCCCAACGAATGTGGTTGGTTTGATCACTCTAAAGGATTTGTTGATAGAGGATCGTGAAGATTTGGATGCAATGGAACTACAATCGACTAGTCCATCGTCCTCTAGATTCCCACATGCCGCAGTCATAGCTGAAACAGGTAACAACTACTGCATTCTTTCGTCGTCTACAAAATAG | 2370 | 41.81 | MLPNQLQNGMGRAKNMWSRLPYNEEDEDDHLSFLKKNDGGGVESLDYEVIENYAYWDEQVLPFVEIFHDYDWLLQSSIFIWKLFIGYSVAVKWLYALLIGIGTGLAAVFINIAVENFAGWKFSLTFSLIQKSYVAGFIVYLAINLILVLSSVYIVVHFAPAAAGSGIPEIKGYLNGIDIHGILFFRTLIGKIFGSIGSVGGGLALCKEGFLKGGSGKYHLNSRWLQVFKSDRDRHDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGEDYSFGELLPMTVIGVIGGLLGALFNQLTLYMTYWRRNYLHKKGNRVKIIEACLISVVTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGMYGNYVNFYCSKENEYNDLATIFFNTQVFHDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIQEGTYALLGAASFLGGSMRITVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQAQLKSIPFLESRPKYQMRKITAKEACGKRVVSLPRVVKVADVVSILQSNRHKGFPVVDSSRNGETRVIGLILRSYLLGLLQSKVDFQHSPLPSDPRGSIPSRHNFSEFVKPASSRGISIDDIHLNSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPTNVVGLITLKDLLIEDREDLDAMELQSTSPSSSRFPHAAVIAETGNNYCILSSSTK | 789 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 14987461 | 15019620 | - | Sed0002312.1 | Sed09g0770 | 725534 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g0770 | 789 | SUPERFAMILY | Clc chloride channel | 77 | 571 | IPR014743 | - | |
| Sed09g0770 | 789 | ProSiteProfiles | CBS domain profile. | 586 | 646 | IPR000644 | - | |
| Sed09g0770 | 789 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 590 | 746 | - | - | |
| Sed09g0770 | 789 | SMART | cbs_1 | 589 | 641 | IPR000644 | - | |
| Sed09g0770 | 789 | SMART | cbs_1 | 702 | 750 | IPR000644 | - | |
| Sed09g0770 | 789 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 755 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Sed09g0770 | 789 | ProSiteProfiles | CBS domain profile. | 699 | 755 | IPR000644 | - | |
| Sed09g0770 | 789 | Gene3D | Clc chloride channel | 87 | 570 | - | - | |
| Sed09g0770 | 789 | PRINTS | Chloride channel signature | 160 | 177 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Chloride channel signature | 191 | 210 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Chloride channel signature | 465 | 485 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Chloride channel signature | 556 | 570 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Chloride channel signature | 500 | 516 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Chloride channel signature | 243 | 262 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Chloride channel signature | 518 | 537 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | Pfam | Voltage gated chloride channel | 148 | 549 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Plant CLC chloride channel signature | 417 | 433 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Plant CLC chloride channel signature | 296 | 303 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Plant CLC chloride channel signature | 278 | 288 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed09g0770 | 789 | PRINTS | Plant CLC chloride channel signature | 264 | 272 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed09g0770 | 789 | SUPERFAMILY | CBS-domain pair | 574 | 746 | IPR046342 | - | |
| Sed09g0770 | 789 | Pfam | CBS domain | 700 | 746 | IPR000644 | - | |
| Sed09g0770 | 789 | Pfam | CBS domain | 586 | 640 | IPR000644 | - | |
| Sed09g0770 | 789 | Gene3D | - | 571 | 752 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g1888 | Sed-Chr4:33569880 | Sed09g0770 | Sed-Chr9:14987461 | 0.00E+00 | dispersed | |
| Sed09g0770 | Sed-Chr9:14987461 | Sed13g1106 | Sed-Chr13:10076534 | 8.40E-163 | dispersed | |
| Sed04g1887 | Sed-Chr4:33569880 | Sed09g0770 | Sed-Chr9:14987461 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g0770 | K05016 | - | csv:101215989 | 1288.86 |