Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0776 ATGACGATGGCGATTCCAGGGAGCATTGTCGCTCTTCTTCTCCTCCTTATGTTCCTTCTCATTCTCCTCATTGTCTGCAAACCATGGCGCTTCTTTCCCTTTTCCCCTTTCCGCACCATCAAGGTTCATGACCTTGAGACACCCCTTGTCTCTGATGGTGCAGATGCTACTCTAAACCAAAGCAATGAGCTTCCCAGAGATTATGATTTGGAGGGTGCACTTCAAACTGATGAACATTTTTGGTCTCCAAGATTACACAGATTGATTCATAACCTAAAACTGTCAGCTGCATCTCCGCACTCAAGTCAGGGTGATAGATTGGTTCCAGATGTAGTTCCTGATCCTTTGGAAGATATTTCTGTTGGTCAAACACTTAGATGTTCGTACTTCACTAGCCAGATTCCAGAAATTCAAAAGCATGAAAAGCTGAACCTAGGAAGTGATCAACTACACGGAATTGCCAGTCAAGATCTCTCACATGGAAGAAGTTACCTCACTTTGGAGGTTATCTCCGGTCCTTCTCGTGGAGTGCATTATTCCGTACATTCTGTGGACATGTCTAGGCTCCCGTTGACTCTTGGAAGGGCATCTCCTAGTGATTTAGAGCTGAAGGATACAGAAGTCTCAGGGAAGCATGCCTCGATAACATGGAATCTAAATAATATGAAATGGGAGCTTGTTGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCACTAAACAATTCTGAGTGTGCAGATAGACAATGGAGTGACCCAGTTGAGCTTGCAAGTGGAGATGTTATAACTCTTGGTTCAACCACCGAAGTGTATGTTCATATTGGGAGCGATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTCTTGGGGTCGATAAGGTTTTGATGATTCTTCCTCAGAAGATTGCCTCAATTCTATCTGATCCACTGAAAAGGGAGAGGGTAGTATCTCTTCGCGATGCTTCTGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGGATCACTATTATGAGGGTTGTACTGCGACAGTGCTTTTAGTATGGGCTGATAATGATGATAATTACTTTGTGCAATGTGCGAATGTCGGGGACTCTGCTTGTGTTCTGAATGTTCATGGGAAGCAGATGAAGATGACAGAAGACCACAGAGTAACTAGCCTTTCAGAAAGACTGCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGGGAGACGCGTTTGTGCGGCTTGAACCTTGCAAGGATGCTTGGTGATAAGTTTCTTAAACAACAAGACCATCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGTGTGAAGAAGGCAATTCAGCTGGTCCTTCAGGCTAGGGAGAGATATTCCACAGGTGCAGAAAACTCGGCCGAAAAGATAGCCAATTTTTTGTTGGGCGAGGCTAGAACACTGCGTACAAAAGACAACACTTCAATAATTTTCTTAGATTTTGACGTTTCTCATAGATGCACTTGTAAAGTTGAACCATAA 1650 43.33 MTMAIPGSIVALLLLLMFLLILLIVCKPWRFFPFSPFRTIKVHDLETPLVSDGADATLNQSNELPRDYDLEGALQTDEHFWSPRLHRLIHNLKLSAASPHSSQGDRLVPDVVPDPLEDISVGQTLRCSYFTSQIPEIQKHEKLNLGSDQLHGIASQDLSHGRSYLTLEVISGPSRGVHYSVHSVDMSRLPLTLGRASPSDLELKDTEVSGKHASITWNLNNMKWELVDLGSLNGTLLNSQPLNNSECADRQWSDPVELASGDVITLGSTTEVYVHIGSDIPFGVGLASDPMALRRGGKKLAMEDVCYYQWPLLGVDKVLMILPQKIASILSDPLKRERVVSLRDASDVLREAFSQTEACMDHYYEGCTATVLLVWADNDDNYFVQCANVGDSACVLNVHGKQMKMTEDHRVTSLSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAIQLVLQARERYSTGAENSAEKIANFLLGEARTLRTKDNTSIIFLDFDVSHRCTCKVEP 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15494913 15548338 - Sed0014933.1 Sed09g0776 725540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0776 549 Pfam FHA domain 192 267 IPR000253 GO:0005515(InterPro)
Sed09g0776 549 Gene3D - 293 544 IPR036457 -
Sed09g0776 549 ProSiteProfiles Forkhead-associated (FHA) domain profile. 191 242 IPR000253 GO:0005515(InterPro)
Sed09g0776 549 SMART FHA_2 190 242 IPR000253 GO:0005515(InterPro)
Sed09g0776 549 SMART PP2C_4 277 535 IPR001932 -
Sed09g0776 549 SUPERFAMILY SMAD/FHA domain 164 276 IPR008984 GO:0005515(InterPro)
Sed09g0776 549 Pfam Protein phosphatase 2C 343 530 IPR001932 -
Sed09g0776 549 ProSiteProfiles PPM-type phosphatase domain profile. 283 537 IPR001932 -
Sed09g0776 549 PANTHER PROTEIN PHOSPHATASE 2C 327 537 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed09g0776 549 Gene3D - 159 292 - -
Sed09g0776 549 SUPERFAMILY PP2C-like 297 538 IPR036457 -
Sed09g0776 549 CDD PP2Cc 295 537 IPR001932 -
Sed09g0776 549 CDD FHA_PP2C70-like 165 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1880 Sed-Chr4:33492360 Sed09g0776 Sed-Chr9:15494913 3.80E-196 dispersed
Sed04g1882 Sed-Chr4:33501062 Sed09g0776 Sed-Chr9:15494913 3.60E-113 dispersed
Sed04g1879 Sed-Chr4:33492360 Sed09g0776 Sed-Chr9:15494913 3.60E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0776 K01090 - csv:101217195 867.84