Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0890 ATGGACCTGCAGCTATTGTGGGTTGGCTTCTTTCTTTGCTGTGGATTTTGGATTCTTGCTTTGAGTGATCAAGATGGTTTCCTAAGCTTATCTTGTGGAGGAACTACCACCTTCATTGACTCCTCCAACATTTCATGGATTCCAGACATCAACTACATCAGCTCTGGTAACACGTCAACCATCGACAATGGCAACGACAAATCTATTTCCACTGGCCATGTTCGGTTCTTCACCGATCCACTGGTGCGAAAATGTTACAAGCTGCCACTAAAAAAAGGCTCTTCATCAGTTCTCATAAGAGCTCAGTTTGTGTACAAAAACTATGACAAGCTTGGGAAGCCCCCTGCTTTCTCTGTTTCTGTTGGGACAGCCATTACTAGCAATGTGAACCTTTCTTCTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAGGATACTGTCTCTTTCTGTTTGCATTCCATTCCTGAGGCTGGAAGTCCTTTGATATCTTCCCTCGAACTCCGACTGCTTCCAAGAGGAGCCTACGACGATGGCTTGCTTCACAGTCAGGCTCTTAGAAAGTCATATCGAATCAACTGTGGGTATACTAATGGATCTCTCAGGTACCCGACTGATCAATATGATCGAATATGGGATGCGGACAAGAACTTCAAGCCATTTCATGTGTCAAGAGGGTTCAAAGTTGAGGCCAACTTTGATTCCATACAAGTGAAGGAAGCTCCACCAGCAGTAGTTGTTGACACAGCTAGAGTTTTGGCAAGAAAAGATGAACTAAGCTACAACCTCCCACTTGATCAAGAAGAAGGAGATTACTTTGTGATTTTGTATTTTGGTGGGATTCTTGCTGTTCATTCTTCATTTGATGTTTTGATCAATGGGAAAGTTATAGAATCAAATTACAGTGTTGAAATGGGAGAGATGAGGGCTTTATATGCCATTCAAGAACAAATCAAGAGCTTGAATATCACTTTCAAAAGTGTTAAATTCTATCCTCTTGTCAATGCCATTGAAGTCTATCAGATTGTTCATGTTCCTTTGGAAGCTTCATCAACCACAGTTTCGGCCCTTCAAGTGATTCATCAATCTACTGGTCTGAATTTTGGATGGGAAGATGATCCATGCTCTCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTGGAGCTTTCCAATGTCAACTTGAGGTCGATCAGCCCGACGTTTGGCGACATTCTCGATCTCAAGATACTGGATTTGCACAACACTTCACTTTCAGGGCAAATAGAAAACTTGGGCAGCCTAACACATCTTGAAAATTTGAACTTGAGTTTCAACAAGCTAAATTCATTTGGGTCAGATTTGGAGAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAGCAATAATCTGCAGGGAAATGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCACCTATTGAATTTGGAGAACAATAGGCTAGAAGGCACTCTTCCATTGTCTTTGAACAAAGGAAGCCTGGAAATTAGAACATCAGGAAATCCTTGCTTGTCTTTCTCCACAATGGCATGCAATGATGTTTCATCAAATCCAGCCATTGAAACACCACAAGTCACAGTGGTTCCTAAGAGGGAAATGAGCAACAACATCAACAAGCATATGCCAACTACAATCATTGTTAGTGCAGTTGCTGCAGCTTTGCTTGTTCTCATCACCCTCTCTCTTTCATTTCTTCTCTACATGAGGAAGCATTCTCAACACACAATTGAACTCACTCACTCAACAAAGGCAGCAATGGAGCTAAGGAATTGGAACTGTGCAAAAGTATTCTCATACAAGGAGATAAAGGAAGCTACAAATAACTTCAAGGAAGTCATTGGAAGAGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCCTCAGGGTAAACTTGTGGCTGTCAAAGTAAGGCTTGACAAAACCCAACTTGGGGCTGAATCCTTTATCAATGAGGTTCATCTCTTGTCTCAAATTTGTCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAACGAATCGAAACGACAAATACTTGTTTACGAGTACTTACCTGGTGGATCCTTGGCTGACCACATCTATGGGAAGAACAAAAAAAGTTTTTCACTTAGCTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGGAGCGAACCAAGAATAATCCATCGTGATGTGAAGTGCAGTAACATTCTTTTGGATTTGGAAATGAATGCAAAAGTTTGTGATTTTGGGCTGTCCAAGCAAATACCACAGCCTGATGCAACTCATGTCACCACTCTTGTCAAAGGCACTGCTGGTTATTTGGATCCCGAATATTACTCAACTCAACAGCTAACGGAAAAGAGTGATGTATATAGTTTTGGCGTTGTTTTATTGGAACTCATTTGTGGACGAGAGCCTTTAAGTCACACGGGAACTCCAGATTCTTTCAACTTGGTGTTATGGGCAAAACCCTACTTGCAAGCAGGTGCATTTGAGATAGTAGATGAGAGTTTGAGGGGAAGCTTTGATGTTGAAAGCATGAAAAAGGCAGCTCTCATTGCTATAAGGTGTGTGGAGAGGGATGCTTCTCTAAGGCCTAACATTGCACAAGTTTTGGCTCACCTTAAAGAGGCTTATGATTCACAGATGACTTATATTTCTTCTTTTTATCATCATTAA 2730 41.32 MDLQLLWVGFFLCCGFWILALSDQDGFLSLSCGGTTTFIDSSNISWIPDINYISSGNTSTIDNGNDKSISTGHVRFFTDPLVRKCYKLPLKKGSSSVLIRAQFVYKNYDKLGKPPAFSVSVGTAITSNVNLSSHDPWTEEFVWPVNKDTVSFCLHSIPEAGSPLISSLELRLLPRGAYDDGLLHSQALRKSYRINCGYTNGSLRYPTDQYDRIWDADKNFKPFHVSRGFKVEANFDSIQVKEAPPAVVVDTARVLARKDELSYNLPLDQEEGDYFVILYFGGILAVHSSFDVLINGKVIESNYSVEMGEMRALYAIQEQIKSLNITFKSVKFYPLVNAIEVYQIVHVPLEASSTTVSALQVIHQSTGLNFGWEDDPCSPRTWDHVGCEGNLVTSLELSNVNLRSISPTFGDILDLKILDLHNTSLSGQIENLGSLTHLENLNLSFNKLNSFGSDLENLSNLKILDLQSNNLQGNVPDSLGELEDLHLLNLENNRLEGTLPLSLNKGSLEIRTSGNPCLSFSTMACNDVSSNPAIETPQVTVVPKREMSNNINKHMPTTIIVSAVAAALLVLITLSLSFLLYMRKHSQHTIELTHSTKAAMELRNWNCAKVFSYKEIKEATNNFKEVIGRGSFGSVYLGKLPQGKLVAVKVRLDKTQLGAESFINEVHLLSQICHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGKNKKSFSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDLEMNAKVCDFGLSKQIPQPDATHVTTLVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGTPDSFNLVLWAKPYLQAGAFEIVDESLRGSFDVESMKKAALIAIRCVERDASLRPNIAQVLAHLKEAYDSQMTYISSFYHH 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29259607 29271178 + Sed0027433.1 Sed09g0890 725654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0890 909 CDD TM_EGFR-like 553 588 - -
Sed09g0890 909 PANTHER OS07G0107800 PROTEIN-RELATED 454 898 - -
Sed09g0890 909 Pfam Protein kinase domain 623 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0890 909 SUPERFAMILY Protein kinase-like (PK-like) 597 892 IPR011009 -
Sed09g0890 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0890 909 Gene3D Transferase(Phosphotransferase) domain 1 697 906 - -
Sed09g0890 909 Pfam Malectin-like domain 30 344 IPR024788 -
Sed09g0890 909 Gene3D Ribonuclease Inhibitor 353 578 IPR032675 -
Sed09g0890 909 Gene3D Phosphorylase Kinase; domain 1 583 696 - -
Sed09g0890 909 SMART serkin_6 621 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0890 909 Gene3D - 189 345 - -
Sed09g0890 909 CDD STKc_IRAK 627 894 - -
Sed09g0890 909 FunFam serine/threonine-protein kinase PBS1-like 590 696 - -
Sed09g0890 909 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 697 904 - -
Sed09g0890 909 SUPERFAMILY L domain-like 357 505 - -
Sed09g0890 909 ProSitePatterns Protein kinases ATP-binding region signature. 627 649 IPR017441 GO:0005524(InterPro)
Sed09g0890 909 ProSiteProfiles Protein kinase domain profile. 621 894 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0890 909 ProSiteProfiles Leucine-rich repeat profile. 437 459 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0890 Sed-Chr9:29259607 Sed09g1631 Sed-Chr9:39775066 1.30E-90 dispersed
Sed09g0890 Sed-Chr9:29259607 Sed04g1316 Sed-Chr4:27534978 1.60E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79762 PF12819 Malectin_like 1.50E-54 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0890 - - - 0.0