Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0951 ATGGCAAACCCTGAATTTTCATTCAAGAAAAAGAATGAACTCATTCTTGTCTTTGCTTTCTTTGCTTCATTACTCCTAGCAAATGCTCTCATTGCAAAAGAAAGTTCTGATGAGAATAGCCTCAACAATGTGAGTGTTAGAGAACAATGCACCACCACTCTTTATCCACAACTTTGCCATTCAACAATATCCTCCATCGTTGAATCATCCAAGTTATTGACAATGAAAGACATTGTAGAACTCTCGTTGAGTGTTGCAATCGATGCAGCCAAACACAACCACAAAAACATCAAGAAACTTGCAATGTCACTCAATCGTCTTACAGAACGAGAGAGAATGGCTCTCGGAGATTGCATCGAGACCACCGACAAGACGCTTGAGGACCTTGGCAAGGTCGTGGAGGATCTCCGCGAGTACCCGCAAAAGAAATCTCTCACCCTATATGCTGATGACCTCAAAACTTATATCAGTTCTGCCATGACCAACCAGGAGACTTGTTTGGAGGGAATCTCAGAGGATAAATCTGGAAAAATGGTGTTGAAATTTATTGAAGCTTCACATATTCAAGTGACAAAATTGTGCAGTAATGCGCTAGCCTTGGTTAAGAATATGACTGATAATGATTTAGCATTAAGCTTGTTGGGCCATGAGAACACTAATAAGAGAGGTTCATCCTTCCATGATGATGACTCCAAAATTGTACTATTTTCTGACATTACCAACAAGGGGGAAGGTGAGAACAGAGGAAGGGAGGCTTTAGAGGAGGGAATCCAGTGGCCAGAATGGATGTCCCTAAGCGACCAGATGTTGTTGGAGTCATCGGCAGAAGTTGCGGCGGACACGGTGGTCGCGGCGGATGGAAGTGGAAACTTCCGAACGGTGTCGGAGGCAGTGGCGGCGGCACCGAAGATGAACAGCAAAAGATATGTGATAAGAATAAAGAAAGGAGTGTACAATGAAAATGTGGAAGTCCCAAGTAATAAGAAGAACATAATGTTTTTGGGTGATGGAAGATCTAAAACCATTATCACAGGTAGCAGAAGTTTTGGGACTGGCTGGACTACCTTCAAATCTGCCACAGTGGCTGCTGTTGGGGATGGATTCTTAGCTCGAGACATAACCTTCGAAAACACAGCCGGACCAGCCAACCACCAAGCCGTAGCTCTCCGCGTTGGCTCGGATCTCTCAGCCTTCTACCGTTGTAGCATCCTAGCCTACCAAGACACTCTCTACGTCCACTCAAACCGTCAATTCTTCGTCGACTGCGTCGTGGCAGGCACAGTCGACTTCATCTTCGGAAACTCCGCGGTAGTAATTCAGAACTCAGTCCTCACCCCCCGACGACCAGGCCCTAAACAACAAAACATGATAACAGCGCAAGCACGAACCGAACAAAATCAAAACACGGGAATCGTGATCCAGAAATGCACGATCAAAGCGACGTCGGACTTGGAGCCCGTGATAAAAGAGTTCCCAAGTTTCCTTGGGAGACCATGGAAGGAATATGCTAGGGTTGTGGTTATGCAAAATGACATAAGCAATGTAATTGATGAAAAGGGGTGGGCTCCATGGAGTGGGGATTTTGCTCTTAAGACATTGTTTTTTGCAGAATATGACAACAAAGGAGCTGGAGCCAATACTTGTTGTAGAGTGAAGTGGTCTTCTGTTATAAATGCAGATCAAGCTAAGGCTTTTACTGTTGGACCATTCATTGGTGGTGCACAGTGGCTTCCATCCACAGGCTTCCCCTATCAGCTTGGCCTTTAA 1767 45.22 MANPEFSFKKKNELILVFAFFASLLLANALIAKESSDENSLNNVSVREQCTTTLYPQLCHSTISSIVESSKLLTMKDIVELSLSVAIDAAKHNHKNIKKLAMSLNRLTERERMALGDCIETTDKTLEDLGKVVEDLREYPQKKSLTLYADDLKTYISSAMTNQETCLEGISEDKSGKMVLKFIEASHIQVTKLCSNALALVKNMTDNDLALSLLGHENTNKRGSSFHDDDSKIVLFSDITNKGEGENRGREALEEGIQWPEWMSLSDQMLLESSAEVAADTVVAADGSGNFRTVSEAVAAAPKMNSKRYVIRIKKGVYNENVEVPSNKKNIMFLGDGRSKTIITGSRSFGTGWTTFKSATVAAVGDGFLARDITFENTAGPANHQAVALRVGSDLSAFYRCSILAYQDTLYVHSNRQFFVDCVVAGTVDFIFGNSAVVIQNSVLTPRRPGPKQQNMITAQARTEQNQNTGIVIQKCTIKATSDLEPVIKEFPSFLGRPWKEYARVVVMQNDISNVIDEKGWAPWSGDFALKTLFFAEYDNKGAGANTCCRVKWSSVINADQAKAFTVGPFIGGAQWLPSTGFPYQLGL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31083975 31088567 + Sed0024480.1 Sed09g0951 725715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0951 588 Pfam Pectinesterase 280 573 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed09g0951 588 FunFam Pectinesterase 42 205 - -
Sed09g0951 588 Pfam Plant invertase/pectin methylesterase inhibitor 45 200 IPR006501 GO:0004857(InterPro)
Sed09g0951 588 FunFam Pectinesterase 274 588 - -
Sed09g0951 588 NCBIfam pectinesterase inhibitor domain 17 204 IPR006501 GO:0004857(InterPro)
Sed09g0951 588 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Sed09g0951 588 SUPERFAMILY Pectin lyase-like 277 587 IPR011050 -
Sed09g0951 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 206 IPR035513 -
Sed09g0951 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 205 IPR035513 -
Sed09g0951 588 PANTHER PECTINESTERASE 17 579 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed09g0951 588 CDD PMEI-like_3 50 205 - -
Sed09g0951 588 SMART PMEI_2 41 200 IPR006501 GO:0004857(InterPro)
Sed09g0951 588 ProSitePatterns Pectinesterase signature 1. 305 324 IPR018040 -
Sed09g0951 588 Gene3D - 274 588 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0951 Sed-Chr9:31083975 Sed09g1726 Sed-Chr9:40469150 1.00E-165 dispersed
Sed09g0951 Sed-Chr9:31083975 Sed04g2368 Sed-Chr4:37098954 9.90E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0951 K01051 - csv:101221055 753.051