Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0994 ATGAACAATGTGAACAACCAAGATCGAAACCAACTCCAAGTCCCTGAGCTAGATTTCGACAACCTAGAAGTGGTAACCGCGCTCGGCAGAGGAGCCAAAGGAGTGGTGTTCTTAGCTCGAAACGCCCACGGCGGCGGCGGCGGCGGCGAATGGCTCGCGCTGAAGGTCATTTCCAGGGAGTTGATCCAGAGGAAGGCCAAGATCGCGAGCTCCGACGGCGACGAGTACCGCAGAGTCTGCTTCGAACGGGAGGTTCTCCGGCTGTTCCGGCACCCGCTCTTGCCTCGACTGCGAGGAGTTTTGGATACGCAGAGAGTGGTTGGTTACGCCATCGATTACTGCAATGGACGAGATCTGAACACTCTCAGGAAGAAGCAGACCGAGAAAATGTTCTCCGATGACGTTATTAGATTTTACGCGGCGGAGTTAGTAATGGCGTTGGAGTATGTTCATAGCTTAGGAATCGTTTACAGAGATTTGAAGCCGGAGAATGTAATGGTTCAACACAACGGCCATGTAATGCTTGTGGATTTCGATCTCTCCACTCGCCTCTCTCACAGATCTCCTAAATCCTCTCCGTCGCCATCGCCGTCGTTGTTGGCGGAATCGAAATCGGCGAAGAAGAAGCATAGATTCTTCCATTTTCACCGATTCTGCAACTCCGGCGTGTCGCCGGAGGTTACCGAGCAACAGACGGCGGAGAAGCCGAAGCCGTCCCCATCACCGTCACCGTCACCGTCGGCGTCGGAATCTGACTCGTCGGAGAAGTCGAACTCGTTCGTCGGAACAGAGGACTACGTGGCGCCGGAGATCGTCGCCGGGAAGGGGCACGACTTCGCCGTCGACTGGTGGTCGTTGGGAGTAGTCCTATACGAGATGCTGTACGGAACGACGCCGTTTCGAGGATCGAATCGGAAGGAGACGTTCTACCGGATTCTGACGAAGACGCCGGATCTGTGCGGCGAAGCAACGCCGTTGAGAGATTTGATTAGGAAGCTGCTGGAGAAAGATCCGACGGAGAGGATTGATCTCGAGGGAATAAAGGGCCACGATTTCTTCAAAGGAACTGATTGGGATTCGGTGATGGAGATTTCCCGGCCGCCGTCGCTGCCGGAGTTGGCGGCGGAGGATATGGAGGGAAATAACTTCATTGATGTGGAGTCCTTTGTCCAAGATTTGTTTTGCAGCGAATCGGAGAAGAAGAATTGTATTCCCACGAATCACATGGAGTCTGACAGATTTCATGTTTTCTGA 1254 53.67 MNNVNNQDRNQLQVPELDFDNLEVVTALGRGAKGVVFLARNAHGGGGGGEWLALKVISRELIQRKAKIASSDGDEYRRVCFEREVLRLFRHPLLPRLRGVLDTQRVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQHNGHVMLVDFDLSTRLSHRSPKSSPSPSPSLLAESKSAKKKHRFFHFHRFCNSGVSPEVTEQQTAEKPKPSPSPSPSPSASESDSSEKSNSFVGTEDYVAPEIVAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKTPDLCGEATPLRDLIRKLLEKDPTERIDLEGIKGHDFFKGTDWDSVMEISRPPSLPELAAEDMEGNNFIDVESFVQDLFCSESEKKNCIPTNHMESDRFHVF 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32525343 32526936 + Sed0027873.1 Sed09g0994 725758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0994 417 SUPERFAMILY Protein kinase-like (PK-like) 19 388 IPR011009 -
Sed09g0994 417 FunFam Serine/threonine-protein kinase OXI1 255 372 - -
Sed09g0994 417 Pfam Protein kinase domain 248 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0994 417 Pfam Protein kinase domain 23 192 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0994 417 ProSiteProfiles Protein kinase domain profile. 22 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0994 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0994 417 Gene3D Transferase(Phosphotransferase) domain 1 118 194 - -
Sed09g0994 417 Gene3D Phosphorylase Kinase; domain 1 21 117 - -
Sed09g0994 417 FunFam Serine/threonine-protein kinase OXI1 118 186 - -
Sed09g0994 417 PANTHER FLIPPASE KINASE 1-RELATED 10 391 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed09g0994 417 Gene3D Transferase(Phosphotransferase) domain 1 249 372 - -
Sed09g0994 417 MobiDBLite consensus disorder prediction 224 260 - -
Sed09g0994 417 ProSiteProfiles AGC-kinase C-terminal domain profile. 354 417 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0994 417 SMART serkin_6 22 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0994 417 MobiDBLite consensus disorder prediction 246 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1123 Sed-Chr5:10966547 Sed09g0994 Sed-Chr9:32525343 1.10E-70 dispersed
Sed09g0994 Sed-Chr9:32525343 Sed10g1114 Sed-Chr10:12766537 1.00E-58 dispersed
Sed07g0253 Sed-Chr7:2016275 Sed09g0994 Sed-Chr9:32525343 9.40E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79765 PF00069 Pkinase 1.80E-28 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0994 K20714 - csv:101223223 584.334