Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0996 ATGGAGAACCAATCATTCTTCAATCCCGCCGGAATGAGCTCCAATTACCCTTCCATGGCTACTTGGCACCACCCCTTCTCATCCGCCATGGATGCCCAACCCCAAGCTCCACACCTCACTCCGAGCTTCCCATTCGATTCGGCTCTCATGGTTTCTTCCACCGCAAACAACCAATTCATGGGGAAATCCGAGCGGCGAACCAATGTGGCGGAGTTTTCGCCCGATCCTGGATTCGCAGAACGGGCGGCTAGGTTTTCGTGTTTGGGAAGCAGGAGCTTCAATGGGCGTCAATGGACGAACGGAATCGGCGATTGCAGATCTCGTTTGCCGATTGCGAATGAGAAATTGAACCGAGTTTCGAGCAGCCCCTCGCTTAAAGCTCTTGGATCTGAAACGAACAACTCCTCGTCGCAAGAAGATGATGGATCGTCGCTCTCGATTTCGAATCCACGGAAGAGGAAGGCAGTTTCCAAGCCCAAATTCAAAGAGTTGGTGGTTGAAGCTTGTGAAAAGGGAAGTCCGAAGAAAATCAAGGAAGTGGACACGAAGGAAATCGAAAACGGGAACGTGAAAACAGAGGAGGATTCGAAGAAAACCGATGGAGATTTAGCGGAAGAGAAGCAATCGAAGGCGGCGAATTCGAAGGCTCCTGAACCTCCAAAAGATTACATTCATGTTAGAGCAAGAAGAGGGCAAGCTACTGATAGCCATAGTCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTACTTCAAGACCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTGATGCTTGATGAGATTATCAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGTCATCAGTGAATACAACCAGGGTGGATTTCAGCACGGATTCTCTCATCTCAAAACAAGTAATTTTTTCTTTCATTTTGCTATAA 963 47.04 MENQSFFNPAGMSSNYPSMATWHHPFSSAMDAQPQAPHLTPSFPFDSALMVSSTANNQFMGKSERRTNVAEFSPDPGFAERAARFSCLGSRSFNGRQWTNGIGDCRSRLPIANEKLNRVSSSPSLKALGSETNNSSSQEDDGSSLSISNPRKRKAVSKPKFKELVVEACEKGSPKKIKEVDTKEIENGNVKTEEDSKKTDGDLAEEKQSKAANSKAPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLSSVNTTRVDFSTDSLISKQVIFSFILL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32673742 32677024 + Sed0022716.2 Sed09g0996 725760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0996 320 MobiDBLite consensus disorder prediction 179 212 - -
Sed09g0996 320 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 69 310 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed09g0996 320 MobiDBLite consensus disorder prediction 119 158 - -
Sed09g0996 320 Gene3D - 229 301 IPR036638 GO:0046983(InterPro)
Sed09g0996 320 SMART finulus 238 288 IPR011598 GO:0046983(InterPro)
Sed09g0996 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 282 IPR011598 GO:0046983(InterPro)
Sed09g0996 320 Pfam Helix-loop-helix DNA-binding domain 236 283 IPR011598 GO:0046983(InterPro)
Sed09g0996 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 297 IPR036638 GO:0046983(InterPro)
Sed09g0996 320 CDD bHLH_AtBPE_like 222 308 - -
Sed09g0996 320 FunFam Basic helix-loop-helix transcription factor 229 301 - -
Sed09g0996 320 MobiDBLite consensus disorder prediction 179 221 - -
Sed09g0996 320 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0259 Sed-Chr7:2094106 Sed09g0996 Sed-Chr9:32673742 4.80E-105 dispersed
Sed07g0260 Sed-Chr7:2094106 Sed09g0996 Sed-Chr9:32673742 4.80E-105 dispersed
Sed09g0996 Sed-Chr9:32673742 Sed12g0703 Sed-Chr12:4204407 2.30E-50 dispersed
Sed09g0995 Sed-Chr9:32673742 Sed09g0996 Sed-Chr9:32673742 2.60E-171 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39581 PF00010 HLH 2.00E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0996 - - - 0.0