Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g0999 | ATGGACGAGGATTTCGATATCCCAGCAGCGGCCGACATGAACGAGGACTTCGATCTTCCCGATGAGCCCGTTGCTCTCAAGGTCGGGGAAGAGAAAGAGATTGGAAATCAAGGCTTGAAGAAGAAGCTCTTGGAGGAAGGTGAAGGATGGGTCACTCCCGAAAATGGCGATGAGGTTGAAGTTCACTACACGGGGACTTTGCTTGATGGGACTCGGTTTGATTCGAGCCGGGATCGGGGAACCCCGTTTAAGTTCACTCTTGGTCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAAAATGAGAAAGCTCTTTTTACCATTCCTCCTGATCTGGCCTATGGTGAATCTGGCTCCCCGCCAACCATTCCTCCTAGTGCTACATTGCAGTTCGACGTAGAGCTACTATCTTGGACGAGCATTAAGGACATATGTAAGGATGGAGGAATATTCAAGAAGGTACTAACCAAAGGGGACAAATGGGAAAATCCAAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGTTAGAAGATGGAACACTTATTACCAAAGCTGATGGAGTGGAATTCACAGTTGGGGATGGTTATTTTTGCCCTGCTCTCGCGAGGGCTGTAAAAACCATGAAACTAGGGGAAAAGGTATTCCTCACGGTGAAACCACAATATGGGTTTGGGGAGAAAGGTAAACCGGCCTCTAGCAATGAAGGTGCAGTTCCACCAAATGCGTCTCTGGATATTACTTTAGAGTTGATATCGTGGAAGACTGTCTCAGAAGTTACTCCCGACAAAAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGGTATGAGAAGCCGAACGAAGGAGCCATTGTCAAAGTGAAATTGATTGGGAAATTGGGAGATGGCAAGGTATTTTTGAAGAAGGGATATAATGATGCTGAAGAGCCATTTGAGTTTAAAGCAGATGAAGAACAAGTGATTGATGGACTTGACAAGGCTGTGTCAACAATGAAGAAAGGGGAGACAGCCTTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTTCGAGTCACAACAAGAGCTGGCTGTAGTTCCTCCGAACTCGACTGTGTATTACGAAGTTGAGCTGGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGATAGAAGCTGCGGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGGAAATTTGTTAGGGCTTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATACGATTCTTCCTTTAGCGAAGAAGAGAAAAAGCAGGCGAAGACATTGAAAGTTGCATGCAATTTGAACAACGCAGCTTGCAAATTGAAGCTAAAGCTGTACAGCGAGGCAGAGAAATTGTGCACTAAGGTACTTGAAATTGAGAGTTCAAACGTGAAGGCTCTCTACAGAAGGGCTCAAGCATACATCCAATTAACTGATTTGGATTTGGCTGAATTTGACATTAAGAAAGCGCTCGACATCGATCCTAATAACAGGGATGTGAAATTGGAGTACAAAGCTCTAAAGGAGAAGGTGAAAGAATACAACAAAAAGGATGCCAAGTTTTATGGAAACATGTTTGCTAAAATGAACAAGTTAGAATCAGCCTAA | 1662 | 43.38 | MDEDFDIPAAADMNEDFDLPDEPVALKVGEEKEIGNQGLKKKLLEEGEGWVTPENGDEVEVHYTGTLLDGTRFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSIKDICKDGGIFKKVLTKGDKWENPKDLDEVLVNFEAKLEDGTLITKADGVEFTVGDGYFCPALARAVKTMKLGEKVFLTVKPQYGFGEKGKPASSNEGAVPPNASLDITLELISWKTVSEVTPDKKVIKKILKEGEGYEKPNEGAIVKVKLIGKLGDGKVFLKKGYNDAEEPFEFKADEEQVIDGLDKAVSTMKKGETALLTIAPEYAFGSFESQQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKAGKFVRASKRYEKAVKFIEYDSSFSEEEKKQAKTLKVACNLNNAACKLKLKLYSEAEKLCTKVLEIESSNVKALYRRAQAYIQLTDLDLAEFDIKKALDIDPNNRDVKLEYKALKEKVKEYNKKDAKFYGNMFAKMNKLESA | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 32865455 | 32870478 | - | Sed0010939.1 | Sed09g0999 | 725763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g0999 | 553 | Gene3D | - | 32 | 147 | IPR046357 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | SUPERFAMILY | FKBP-like | 33 | 157 | - | - | |
| Sed09g0999 | 553 | Pfam | Tetratricopeptide repeat | 483 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Sed09g0999 | 553 | SUPERFAMILY | FKBP-like | 264 | 399 | - | - | |
| Sed09g0999 | 553 | Gene3D | - | 262 | 383 | IPR046357 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 167 | 257 | IPR001179 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | Gene3D | Tetratricopeptide repeat domain | 385 | 542 | IPR011990 | GO:0005515(InterPro) | |
| Sed09g0999 | 553 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 31 | 146 | IPR050754 | - | |
| Sed09g0999 | 553 | FunFam | Peptidylprolyl isomerase | 148 | 261 | - | - | |
| Sed09g0999 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | FunFam | Peptidylprolyl isomerase | 262 | 384 | - | - | |
| Sed09g0999 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | FunFam | Peptidylprolyl isomerase | 387 | 542 | - | - | |
| Sed09g0999 | 553 | SUPERFAMILY | FKBP-like | 148 | 264 | - | - | |
| Sed09g0999 | 553 | SUPERFAMILY | TPR-like | 387 | 548 | IPR011990 | GO:0005515(InterPro) | |
| Sed09g0999 | 553 | Coils | Coil | 515 | 535 | - | - | |
| Sed09g0999 | 553 | FunFam | Peptidylprolyl isomerase | 29 | 147 | - | - | |
| Sed09g0999 | 553 | SMART | tpr_5 | 399 | 432 | IPR019734 | GO:0005515(InterPro) | |
| Sed09g0999 | 553 | SMART | tpr_5 | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Sed09g0999 | 553 | SMART | tpr_5 | 448 | 481 | IPR019734 | GO:0005515(InterPro) | |
| Sed09g0999 | 553 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Sed09g0999 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755(InterPro) | |
| Sed09g0999 | 553 | Gene3D | - | 148 | 261 | IPR046357 | GO:0003755(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g1074 | Sed-Chr2:48087014 | Sed09g0999 | Sed-Chr9:32865455 | 2.70E-240 | dispersed | |
| Sed02g1075 | Sed-Chr2:48087014 | Sed09g0999 | Sed-Chr9:32865455 | 5.40E-203 | dispersed | |
| Sed09g0999 | Sed-Chr9:32865455 | Sed13g0193 | Sed-Chr13:1258062 | 1.40E-18 | dispersed | |
| Sed11g2219 | Sed-Chr11:35748045 | Sed09g0999 | Sed-Chr9:32865455 | 2.70E-19 | transposed | |
| Sed07g0262 | Sed-Chr7:2113099 | Sed09g0999 | Sed-Chr9:32865455 | 7.20E-275 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g0999 | K09571 | - | csv:101214513 | 1006.51 |