Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g1034 | ATGGATGAAATTATTTTTAAAAATGACCAGGCTGCCAATATCGTTGTTGGTTCTCAGATATGGGTGGGAGATTTAGAGTCCGTTTGGATTGATGGACTCGTGTTGAACATCACTGGGGAAGATGCTGAGATTCAAACTAGTGATGGGAGAGAGGTGGTTGTGAAAATTTCAAGTCTATTTCCAAGGGATGCAGAAGCTCCTGAGAGTGGAATTGATGATATGACCAGAATGTCATATTTGAATGAGCCAGGGTTGCTGCACAATTTGGCTATCAGATATGCAGGAAATGAAATCTACACTTACACTGGAAATATTCTTATTGCCATCAACCCATTCCACAGTATTTCAAATTTGTATGATGCCTTTGTGATGGAGAAGTACAAGGGAGCACCAATTGGGGAGCTGAAACCTCATGTTTTTGCAATTGCCGATGGCGCATATCGGGCAATGATAAATAATGGGAAAAGCAACTCCATTCTGGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACCACCAAAATGCTTATGTTGTACCTTGCATTTTTGGGCGGCCATGCTGCCTCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGAAATGCAAAAACAGTAAGAAACAACAATTCAAGTCGGTTTGGAAAATTTGTTGAGATCCAATTTGACGAGAATGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAACGCAACTATCATTGCTTTTATCTTCTCTGTGCAGCTCCACCCCAAGAGAGAGAGAGATATAAGCTGGGAAATCCAAAGTCGTTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCCGGTGTGAATGATGCTCATGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCAGAGTTGTTGCTGCAATTCTTCACCTTGGTAATATTGACTTTGCAAAAGGAGAAGACTCTGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCCCTAGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCGGATGATATCATCAAGAGAAGTCTTGATCCGTATGGCTCAACACTTAGCAGGGATGGATTAGCTAAGACAATATATTCTCGTTTATTTGACTGGCTGGTAGATAAAATTAATGTTTCCATCGGACAAGATCCTTGCTCTAAATTTCTGATCGGAGTCCTGGATATTTATGGTTTTGAGAGCTTTAAATCTAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTACATGAGGAAATTGATTGGAGCTACATCGAATTTGTTGATAATCAAGATGTCCTCGACCTCATTGAGAAGGTTCTATATCAGTCAGATCTGTTTCTAGACAAAAATAAAGATTATGTTGTCCCTGAACATCAAGATTTGTTAAGTGCTTCAAAATGTTCATTTGTTGCTGGCCTTTTCCTTCCTTTTCGCGAGGAGACTGCTAAACCATCAAAATTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTGATGGAAACATTAAATTCAACAGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTACAGCCGGCTGTATTTGAGAATGCTACTGTTATGCAACAATTACGTTCTGGTGGTGTTATGGAGGCGGTTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATATCCTGAATTTTTATCTCGATTTGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGTAGCATGCGAAAAGATTCTAGAGAAGATTGGACTTAAAGGTTATCTGGTAGGGAAGTCGAAACTTTTCCTAAAAGGTAAGTTGATGGCTGAACTAGATGCACAAAGAACAAGAGTATATAGTTCTGCTGCCATAGCTATACAAAAGCGTTTCAAAGCTCGAATTGATTGTAAAAAGTACCTTGCTATGCAAAGTGGTTGCATTCGTCTACAATCATATTGGAGAGGTGTTCTTGCTCGCGAGTCATATGAAGTGTTTAGGAGGGAATCTGCTGCCACCAAAATTCAAAAGAATATTTGGAGATACCTTGCCAGGAATGTTCATGTTAAAACAACGATCTCTACAGTTGTTATACAGGCTGGTATGCGAGCAATGGCTGCTCGGAGTGAATACAGACATAGGAGGCAGGTTAGGGCTGCCATAGTTATTCAATCTTATTGGCGTGGGTATAGAACCCGTTCAGGGTATAAGATGAATAGAAAGCCATCAACCAGTTCACAATGCGAATCGAGCACAAGAAATGCTGGTGAAGGTCAAAAGAAGCAAAGGATGACTAACTTCAAAGAAACAGAGGAGGATAGTTCCTTGATCAATAGCAGTACAGACTCCATTGGTGAAACAATTGAAATTTCCAAGGAAAGTCATGTTTCTATGAAAGAAGAAGAAGAATCATATTTTACTATTAAAGAGCCCACTAGTCCGGTTAAAGATGAAGAAAAGTTGGTGACTCTCAGAGCAGAAGTAGCTAATCTAAAGACCCAATTACAAGCTGAAAGGAAAAGAGCTAATGAATATGAAAGGAAGTATATTGCAGCACAGAAGTTAGGCGAGCATGGACTTAGGAGACTAAGAGATAACGAAAGGAAGGTGCATCAACTTCAAGACTGCATAAGCAGGATGGTACATTGCATGTCAAACCAAATCTCGGAGATGAAAATGATCATGAGTTCTAACTCAGATGCTGCATCTAGTTCTATATCAAATGAGGTTCAGATGCATTCCGCATCTAGTTGCTCTGATTCATCATCAGAAGAATTTACCTTTCCTGTTCCTAGTGGGTCGACGCCAACTTTCTCGTCTTCATTTGGTACCAACGCTTTTCAGATGATTGTGCAAGATATTTCAGCTGCACCAGGATCTGACAGTGACAAGGAAGGGGGATTCTCTGACTATTTCTAG | 3120 | 39.94 | MDEIIFKNDQAANIVVGSQIWVGDLESVWIDGLVLNITGEDAEIQTSDGREVVVKISSLFPRDAEAPESGIDDMTRMSYLNEPGLLHNLAIRYAGNEIYTYTGNILIAINPFHSISNLYDAFVMEKYKGAPIGELKPHVFAIADGAYRAMINNGKSNSILVSGESGAGKTETTKMLMLYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDENGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNIDFAKGEDSDSSFVKDEESKFHLHMTAELLMCDPLALEDALCKRMMITPDDIIKRSLDPYGSTLSRDGLAKTIYSRLFDWLVDKINVSIGQDPCSKFLIGVLDIYGFESFKSNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVHEEIDWSYIEFVDNQDVLDLIEKVLYQSDLFLDKNKDYVVPEHQDLLSASKCSFVAGLFLPFREETAKPSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAVFENATVMQQLRSGGVMEAVRIKCAGYPTHRTYPEFLSRFGILAPEVLEGDYEEKVACEKILEKIGLKGYLVGKSKLFLKGKLMAELDAQRTRVYSSAAIAIQKRFKARIDCKKYLAMQSGCIRLQSYWRGVLARESYEVFRRESAATKIQKNIWRYLARNVHVKTTISTVVIQAGMRAMAARSEYRHRRQVRAAIVIQSYWRGYRTRSGYKMNRKPSTSSQCESSTRNAGEGQKKQRMTNFKETEEDSSLINSSTDSIGETIEISKESHVSMKEEEESYFTIKEPTSPVKDEEKLVTLRAEVANLKTQLQAERKRANEYERKYIAAQKLGEHGLRRLRDNERKVHQLQDCISRMVHCMSNQISEMKMIMSSNSDAASSSISNEVQMHSASSCSDSSSEEFTFPVPSGSTPTFSSSFGTNAFQMIVQDISAAPGSDSDKEGGFSDYF | 1039 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 33741678 | 33771489 | + | Sed0003379.1 | Sed09g1034 | 725798 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g1034 | 1039 | MobiDBLite | consensus disorder prediction | 804 | 828 | - | - | |
| Sed09g1034 | 1039 | FunFam | Myosin 2 | 319 | 435 | - | - | |
| Sed09g1034 | 1039 | Gene3D | - | 619 | 685 | - | - | |
| Sed09g1034 | 1039 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 319 | 429 | - | - | |
| Sed09g1034 | 1039 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 520 | 553 | - | - | |
| Sed09g1034 | 1039 | ProSiteProfiles | Myosin motor domain profile. | 69 | 684 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | Gene3D | - | 446 | 504 | - | - | |
| Sed09g1034 | 1039 | FunFam | Myosin heavy chain | 259 | 314 | - | - | |
| Sed09g1034 | 1039 | CDD | MYSc_Myo11 | 83 | 672 | IPR036018 | - | |
| Sed09g1034 | 1039 | ProSiteProfiles | IQ motif profile. | 761 | 787 | - | - | |
| Sed09g1034 | 1039 | MobiDBLite | consensus disorder prediction | 838 | 852 | - | - | |
| Sed09g1034 | 1039 | Gene3D | - | 687 | 739 | - | - | |
| Sed09g1034 | 1039 | Gene3D | - | 761 | 802 | - | - | |
| Sed09g1034 | 1039 | SMART | MYSc_2a | 63 | 685 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | Gene3D | - | 259 | 317 | - | - | |
| Sed09g1034 | 1039 | PRINTS | Myosin heavy chain signature | 203 | 230 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | PRINTS | Myosin heavy chain signature | 436 | 464 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | PRINTS | Myosin heavy chain signature | 156 | 181 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | PRINTS | Myosin heavy chain signature | 99 | 118 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | PRINTS | Myosin heavy chain signature | 489 | 517 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | Coils | Coil | 888 | 922 | - | - | |
| Sed09g1034 | 1039 | Pfam | Myosin head (motor domain) | 72 | 505 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | Pfam | Myosin N-terminal SH3-like domain | 17 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | Gene3D | Kinesin motor domain | 576 | 614 | IPR036961 | - | |
| Sed09g1034 | 1039 | Gene3D | Kinesin motor domain | 72 | 445 | IPR036961 | - | |
| Sed09g1034 | 1039 | ProSiteProfiles | IQ motif profile. | 783 | 812 | - | - | |
| Sed09g1034 | 1039 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 737 | 807 | IPR027417 | - | |
| Sed09g1034 | 1039 | ProSiteProfiles | IQ motif profile. | 710 | 739 | - | - | |
| Sed09g1034 | 1039 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 43 | 735 | IPR027417 | - | |
| Sed09g1034 | 1039 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 15 | 64 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed09g1034 | 1039 | MobiDBLite | consensus disorder prediction | 971 | 997 | - | - | |
| Sed09g1034 | 1039 | MobiDBLite | consensus disorder prediction | 804 | 852 | - | - | |
| Sed09g1034 | 1039 | Gene3D | - | 505 | 575 | - | - | |
| Sed09g1034 | 1039 | PANTHER | MYOSIN | 21 | 505 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed09g1034 | 1039 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1034 | 1039 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1034 | 1039 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1034 | 1039 | SMART | iq_5 | 709 | 731 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1034 | 1039 | Pfam | IQ calmodulin-binding motif | 785 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Sed09g1034 | 1039 | Pfam | IQ calmodulin-binding motif | 714 | 730 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed09g1034 | Sed-Chr9:33741678 | Sed11g0201 | Sed-Chr11:1805906 | 0.00E+00 | dispersed | |
| Sed09g1034 | Sed-Chr9:33741678 | Sed08g1586 | Sed-Chr8:30963986 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g1034 | K10357 | - | csv:101220626 | 1653.26 |