Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1040 ATGGATTCGGCGAGGAGTTGGTTGAATAAGCTTCAGCCTAGAGATAGGTTGAGGGGTTCTACGAAGAAGAGGGATACTACCAGTATGGGAGGGAATGAGGATTCTAGTGAGCCAATGGACGAAGAAATGCTTTCGAATATCACGAAGCAGAAGGTTGCTGCGGCCAAGCAGTATATTGAGAATCATTACAAGGAGCAAAGGAAGAATCTGCAAGATAGAAAGGAAAGACGAAATATATTGGAAAAGAAATTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTTCTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGAGGATTTTGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCGGAGATGCTTCGAAGGGGCCAGGTGGAACATGTGAGAGCCGAAAGAAATTTGCTTGCTGAAGTAGACAGCAATTGCATCGTAAAGCTCTATTGTTCATTTCAAGATGAGGAGTTTCTTTACCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGGAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTACGTCGGTCAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAACTATATTCATAGAGATATTAAGCCTGACAATTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTACACTTCAAGAACATGATCTTGATACAGGGAGTGTTCAGAATGGAGCCGGACAAAGCGATGAGCGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAAAACTCATTTGAAGTTCCCGGACGAGGCAACGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTACTATGCAATGTTAATCAGAGGCTAGGTACAAATGGCGCGGATGAAATTAAGGTTCATTCTTGGTTTGATGGTACCGAATGGGATAGGCTGTACGAAATGGAAGCTGCATTTGTTCCCGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAAGTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATTGTCAACGATTATCAACTGCCTGGGATGGCTGAATTGAAGAAAAAAAGCAGCAAACCAAAGAAACCCTCAGTCAAGTCACTCTTTGATGGCGAGTCGGAGGCATCAGATGCATCTGATACATCGAATCATTGTCAGCCCTCTGAAGGTAGCTTTTCGAACTCAACGACATCTCAGTTGGATGTACTCGAAGAGAGGAAAGAGTCCATGTAA 1674 41.52 MDSARSWLNKLQPRDRLRGSTKKRDTTSMGGNEDSSEPMDEEMLSNITKQKVAAAKQYIENHYKEQRKNLQDRKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGQIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEHDLDTGSVQNGAGQSDERNAAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPDEATLSPLAKDLISKLLCNVNQRLGTNGADEIKVHSWFDGTEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKSSKPKKPSVKSLFDGESEASDASDTSNHCQPSEGSFSNSTTSQLDVLEERKESM 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33812872 33824762 - Sed0009945.1 Sed09g1040 725804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1040 557 CDD MobB_NDR_LATS-like 55 116 - -
Sed09g1040 557 FunFam Non-specific serine/threonine protein kinase 319 438 - -
Sed09g1040 557 Coils Coil 63 83 - -
Sed09g1040 557 SUPERFAMILY Protein kinase-like (PK-like) 94 474 IPR011009 -
Sed09g1040 557 SMART pkinase_C_6 421 485 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 488 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed09g1040 557 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524(InterPro)
Sed09g1040 557 FunFam Non-specific serine/threonine protein kinase 205 272 - -
Sed09g1040 557 MobiDBLite consensus disorder prediction 9 30 - -
Sed09g1040 557 MobiDBLite consensus disorder prediction 501 557 - -
Sed09g1040 557 Gene3D Phosphorylase Kinase; domain 1 439 449 - -
Sed09g1040 557 Gene3D Phosphorylase Kinase; domain 1 119 204 - -
Sed09g1040 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 MobiDBLite consensus disorder prediction 282 302 - -
Sed09g1040 557 SMART serkin_6 121 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 FunFam Non-specific serine/threonine protein kinase 92 204 - -
Sed09g1040 557 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 CDD STKc_NDR_like 119 484 - -
Sed09g1040 557 Pfam Protein kinase domain 123 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 Pfam Protein kinase domain 317 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 MobiDBLite consensus disorder prediction 501 515 - -
Sed09g1040 557 Gene3D Transferase(Phosphotransferase) domain 1 319 438 - -
Sed09g1040 557 Gene3D Transferase(Phosphotransferase) domain 1 205 270 - -
Sed09g1040 557 MobiDBLite consensus disorder prediction 521 547 - -
Sed09g1040 557 ProSiteProfiles Protein kinase domain profile. 121 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1040 557 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0517 Sed-Chr7:3913891 Sed09g1040 Sed-Chr9:33812872 2.20E-258 dispersed
Sed07g0518 Sed-Chr7:3913891 Sed09g1040 Sed-Chr9:33812872 1.60E-272 dispersed
Sed09g0671 Sed-Chr9:9007675 Sed09g1040 Sed-Chr9:33812872 1.60E-240 dispersed
Sed09g1040 Sed-Chr9:33812872 Sed09g1042 Sed-Chr9:33815258 2.40E-289 dispersed
Sed09g1040 Sed-Chr9:33812872 Sed09g1041 Sed-Chr9:33812872 4.30E-238 tandem
Sed04g1994 Sed-Chr4:34492292 Sed09g1040 Sed-Chr9:33812872 2.90E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79766 PF00069 Pkinase 5.60E-64 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1040 K08790 - csv:101221720 984.941