Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g1041 | ATGAAAAAGCTTAAAAAATCGGAGATGCTTCGAAGGGGCCAGGTGGAACATGTGAGAGCCGAAAGAAATTTGCTTGCTGAAGTAGACAGCAATTGCATCGTAAAGCTCTATTGTTCATTTCAAGATGAGGAGTTTCTTTACCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGGAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTACGTCGGTCAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAACTATATTCATAGAGATATTAAGCCTGACAATTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTACACTTCAAGAACATGATCTTGATACAGGGAGTGTTCAGAATGGAGCCGGACAAAGCGATGAGCGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAAAACTCATTTGAAGTTCCCGGACGAGGCAACGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTACTATGCAATGTTAATCAGAGGCTAGGTACAAATGGCGCGGATGAAATTAAGGTTCATTCTTGGTTTGATGGTACCGAATGGGATAGGCTGTACGAAATGGAAGCTGCATTTGTTCCCGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAAGTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATTGTCAACGATTATCAACTGCCTGGGATGGCTGAATTGAAGAAAAAAAGCAGCAAACCAAAGAAACCCTCAGTCAAGTCACTCTTTGATGGCGAGTCGGAGGCATCAGATGCATCTGATACATCGAATCATTGTCAGCCCTCTGAAGGTAGCTTTTCGAACTCAACGACATCTCAGTTGGATGTACTCGAAGAGAGGAAAGAGTCCATGTAA | 1230 | 41.46 | MKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGQIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEHDLDTGSVQNGAGQSDERNAAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPDEATLSPLAKDLISKLLCNVNQRLGTNGADEIKVHSWFDGTEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKSSKPKKPSVKSLFDGESEASDASDTSNHCQPSEGSFSNSTTSQLDVLEERKESM | 409 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 33812872 | 33824762 | - | Sed0009945.2 | Sed09g1041 | 725805 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g1041 | 409 | MobiDBLite | consensus disorder prediction | 353 | 409 | - | - | |
| Sed09g1041 | 409 | CDD | STKc_NDR_like | 1 | 336 | - | - | |
| Sed09g1041 | 409 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 273 | 345 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | SMART | pkinase_C_6 | 273 | 337 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | Gene3D | Transferase(Phosphotransferase) domain 1 | 171 | 290 | - | - | |
| Sed09g1041 | 409 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 56 | - | - | |
| Sed09g1041 | 409 | MobiDBLite | consensus disorder prediction | 134 | 154 | - | - | |
| Sed09g1041 | 409 | MobiDBLite | consensus disorder prediction | 353 | 367 | - | - | |
| Sed09g1041 | 409 | Gene3D | Phosphorylase Kinase; domain 1 | 291 | 301 | - | - | |
| Sed09g1041 | 409 | MobiDBLite | consensus disorder prediction | 373 | 399 | - | - | |
| Sed09g1041 | 409 | Pfam | Protein kinase C terminal domain | 291 | 335 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | ProSiteProfiles | Protein kinase domain profile. | 1 | 272 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | Pfam | Protein kinase domain | 169 | 272 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | Pfam | Protein kinase domain | 1 | 124 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | FunFam | Non-specific serine/threonine protein kinase | 57 | 124 | - | - | |
| Sed09g1041 | 409 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 92 | 104 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 1 | 340 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
| Sed09g1041 | 409 | SMART | serkin_6 | 1 | 272 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed09g1041 | 409 | Gene3D | Transferase(Phosphotransferase) domain 1 | 57 | 128 | - | - | |
| Sed09g1041 | 409 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 326 | IPR011009 | - | |
| Sed09g1041 | 409 | FunFam | Non-specific serine/threonine protein kinase | 171 | 290 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed09g1041 | Sed-Chr9:33812872 | Sed14g1668 | Sed-Chr14:24779204 | 6.50E-159 | dispersed | |
| Sed09g1040 | Sed-Chr9:33812872 | Sed09g1041 | Sed-Chr9:33812872 | 4.30E-238 | tandem | |
| Sed09g1041 | Sed-Chr9:33812872 | Sed09g1042 | Sed-Chr9:33815258 | 3.20E-206 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 79767 | PF00069 | Pkinase | 7.60E-54 | CL0016 | Sed | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g1041 | K08790 | - | csv:101221720 | 737.258 |