Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1042 ATGGATTCGGCGAGGAGTTGGTTGAATAAGCTTCAGCCTAGAGATAGGTTGAGGGGTTCTACGAAGAAGAGGGATACTACCAGTATGGGAGGGAATGAGGATTCTAGTGAGCCAATGGACGAAGAAATGCTTTCGAATATCACGAAGCAGAAGGTTGCTGCGGCCAAGCAGTATATTGAGAATCATTACAAGGAGCAAAGGAAGAATCTGCAAGATAGAAAGGAAAGACGAAATATATTGGAAAAGAAATTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTTCTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGAGGATTTTGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCGGAGATGCTTCGAAGGGGCCAGGTGGAACATGTGAGAGCCGAAAGAAATTTGCTTGCTGAAGTAGACAGCAATTGCATCGTAAAGCTCTATTGTTCATTTCAAGATGAGGAGTTTCTTTACCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGGAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTACGTCGGTCAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAACTATATTCATAGAGATATTAAGCCTGACAATTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTACACTTCAAGAACATGATCTTGATACAGGGAGTGTTCAGAATGGAGCCGGACAAAGCGATGAGCGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAAAACTCATTTGAAGTTCCCGGACGAGGCAACGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTACTATGCAATGTTAATCAGAGGCTAGGTACAAATGGCGCGGATGAAATTAAGGTTCATTCTTGGTTTGATGGTACCGAATGGGATAGGCTGTACGAAATGGAAGCTGCATTTGTTCCCGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAAGTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATTGTCAACGATTATCAACTGCCTGGGATGGGTATGTCTGACTTATAG 1509 41.15 MDSARSWLNKLQPRDRLRGSTKKRDTTSMGGNEDSSEPMDEEMLSNITKQKVAAAKQYIENHYKEQRKNLQDRKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGQIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEHDLDTGSVQNGAGQSDERNAAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPDEATLSPLAKDLISKLLCNVNQRLGTNGADEIKVHSWFDGTEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMGMSDL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33815258 33824762 - Sed0009945.3 Sed09g1042 725806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1042 502 CDD MobB_NDR_LATS-like 55 116 - -
Sed09g1042 502 Coils Coil 63 83 - -
Sed09g1042 502 SMART pkinase_C_6 421 485 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524(InterPro)
Sed09g1042 502 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 487 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed09g1042 502 MobiDBLite consensus disorder prediction 9 30 - -
Sed09g1042 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 MobiDBLite consensus disorder prediction 282 302 - -
Sed09g1042 502 SMART serkin_6 121 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 Pfam Protein kinase domain 317 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 Pfam Protein kinase domain 123 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 FunFam Non-specific serine/threonine protein kinase 205 272 - -
Sed09g1042 502 SUPERFAMILY Protein kinase-like (PK-like) 94 474 IPR011009 -
Sed09g1042 502 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 FunFam Non-specific serine/threonine protein kinase 319 438 - -
Sed09g1042 502 CDD STKc_NDR_like 119 484 - -
Sed09g1042 502 Gene3D Phosphorylase Kinase; domain 1 439 449 - -
Sed09g1042 502 Gene3D Phosphorylase Kinase; domain 1 119 204 - -
Sed09g1042 502 Gene3D Transferase(Phosphotransferase) domain 1 319 438 - -
Sed09g1042 502 Gene3D Transferase(Phosphotransferase) domain 1 205 270 - -
Sed09g1042 502 FunFam Non-specific serine/threonine protein kinase 92 204 - -
Sed09g1042 502 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 ProSiteProfiles Protein kinase domain profile. 121 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g1042 502 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1040 Sed-Chr9:33812872 Sed09g1042 Sed-Chr9:33815258 2.40E-289 dispersed
Sed09g1042 Sed-Chr9:33815258 Sed14g1668 Sed-Chr14:24779204 1.90E-200 dispersed
Sed09g1041 Sed-Chr9:33812872 Sed09g1042 Sed-Chr9:33815258 3.20E-206 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79768 PF00069 Pkinase 4.30E-64 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1042 K08790 - csv:101221720 924.465