Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1060 ATGTCGGTTGATAATTATCATTTCTTTGGCTACAAAGAAAATTTCTTGTGGAGCAATAATACTGAAAGTTTCCCCGGGCAAGAGATCAATTCTCACCTCTCATTTGACTTCAATTACTTGGAGGAGATGTTGCTCGGGGAGGCCGGAGGAGCGACATCGTCGTCGTCGGATTCGAGCTCTTACTCGTCTTCGATGGTGGAAGTCAAGGAGGAAATAGAAGAAGAGAGTTTGAGCGACGTTGTTGTGCAGGAAGATGAATTATTGCACAAGGAGGAGAGGGCATATAGAGGGGTGCGGAGAAGGCCATGGGGGAAGTACGCGGCCGAGATAAGGGACTCGACGCGACAAGGGGTCAGGGTTTGGTTGGGGACGTTTGAGAGTGCAGAGGCTGCAGCGTTGGCCTATGACCAAGCCGCATTTTGCATGAAAGGGGCGCTAGCCACACTCAATTTTCCCGTGGAGGTTGTTCAAGAGTCGCTTCGAGAGATGATGTATCGGTGGGACGCTGGGAGCTCACCTGTCTTGGCGCTCAAGCGACGCCACTCGATAAAAAGGAAGAAGATGGCAGAGGTGGAAAAGATGGAGAAAAAGATGAAGAAGAAGAAAACTGTGGTGGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 672 48.66 MSVDNYHFFGYKENFLWSNNTESFPGQEINSHLSFDFNYLEEMLLGEAGGATSSSSDSSSYSSSMVEVKEEIEEESLSDVVVQEDELLHKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEAAALAYDQAAFCMKGALATLNFPVEVVQESLREMMYRWDAGSSPVLALKRRHSIKRKKMAEVEKMEKKMKKKKTVVVFEDLGVEYLEELLSLTS 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34167373 34168044 - Sed0003241.1 Sed09g1060 725824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1060 223 CDD AP2 95 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1060 223 SMART rav1_2 94 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1060 223 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1060 223 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1060 223 PANTHER DNA-BINDING DOMAIN 62 188 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed09g1060 223 Gene3D AP2/ERF domain 94 155 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1060 223 FunFam Ethylene-responsive transcription factor 2 93 154 - -
Sed09g1060 223 Coils Coil 184 204 - -
Sed09g1060 223 ProSiteProfiles AP2/ERF domain profile. 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1060 223 Pfam AP2 domain 95 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed09g1060 223 SUPERFAMILY DNA-binding domain 94 154 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4313 Sed-Chr1:71258306 Sed09g1060 Sed-Chr9:34167373 1.90E-46 dispersed
Sed07g0482 Sed-Chr7:3678213 Sed09g1060 Sed-Chr9:34167373 1.40E-78 dispersed
Sed09g1060 Sed-Chr9:34167373 Sed12g1030 Sed-Chr12:6648317 1.80E-38 dispersed
Sed09g1060 Sed-Chr9:34167373 Sed09g1061 Sed-Chr9:34210101 8.50E-20 tandem
Sed04g1981 Sed-Chr4:34382617 Sed09g1060 Sed-Chr9:34167373 4.50E-20 wgd
Sed07g0481 Sed-Chr7:3658297 Sed09g1060 Sed-Chr9:34167373 4.00E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39586 PF00847 AP2 1.70E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1060 K14516 - csv:101205053 243.432