Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1060 | ATGTCGGTTGATAATTATCATTTCTTTGGCTACAAAGAAAATTTCTTGTGGAGCAATAATACTGAAAGTTTCCCCGGGCAAGAGATCAATTCTCACCTCTCATTTGACTTCAATTACTTGGAGGAGATGTTGCTCGGGGAGGCCGGAGGAGCGACATCGTCGTCGTCGGATTCGAGCTCTTACTCGTCTTCGATGGTGGAAGTCAAGGAGGAAATAGAAGAAGAGAGTTTGAGCGACGTTGTTGTGCAGGAAGATGAATTATTGCACAAGGAGGAGAGGGCATATAGAGGGGTGCGGAGAAGGCCATGGGGGAAGTACGCGGCCGAGATAAGGGACTCGACGCGACAAGGGGTCAGGGTTTGGTTGGGGACGTTTGAGAGTGCAGAGGCTGCAGCGTTGGCCTATGACCAAGCCGCATTTTGCATGAAAGGGGCGCTAGCCACACTCAATTTTCCCGTGGAGGTTGTTCAAGAGTCGCTTCGAGAGATGATGTATCGGTGGGACGCTGGGAGCTCACCTGTCTTGGCGCTCAAGCGACGCCACTCGATAAAAAGGAAGAAGATGGCAGAGGTGGAAAAGATGGAGAAAAAGATGAAGAAGAAGAAAACTGTGGTGGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA | 672 | 48.66 | MSVDNYHFFGYKENFLWSNNTESFPGQEINSHLSFDFNYLEEMLLGEAGGATSSSSDSSSYSSSMVEVKEEIEEESLSDVVVQEDELLHKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEAAALAYDQAAFCMKGALATLNFPVEVVQESLREMMYRWDAGSSPVLALKRRHSIKRKKMAEVEKMEKKMKKKKTVVVFEDLGVEYLEELLSLTS | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 34167373 | 34168044 | - | Sed0003241.1 | Sed09g1060 | 725824 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1060 | 223 | CDD | AP2 | 95 | 153 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1060 | 223 | SMART | rav1_2 | 94 | 158 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1060 | 223 | PRINTS | Ethylene responsive element binding protein signature | 118 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1060 | 223 | PRINTS | Ethylene responsive element binding protein signature | 95 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1060 | 223 | PANTHER | DNA-BINDING DOMAIN | 62 | 188 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Sed09g1060 | 223 | Gene3D | AP2/ERF domain | 94 | 155 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1060 | 223 | FunFam | Ethylene-responsive transcription factor 2 | 93 | 154 | - | - | |
Sed09g1060 | 223 | Coils | Coil | 184 | 204 | - | - | |
Sed09g1060 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 94 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1060 | 223 | Pfam | AP2 domain | 95 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed09g1060 | 223 | SUPERFAMILY | DNA-binding domain | 94 | 154 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4313 | Sed-Chr1:71258306 | Sed09g1060 | Sed-Chr9:34167373 | 1.90E-46 | dispersed | |
Sed07g0482 | Sed-Chr7:3678213 | Sed09g1060 | Sed-Chr9:34167373 | 1.40E-78 | dispersed | |
Sed09g1060 | Sed-Chr9:34167373 | Sed12g1030 | Sed-Chr12:6648317 | 1.80E-38 | dispersed | |
Sed09g1060 | Sed-Chr9:34167373 | Sed09g1061 | Sed-Chr9:34210101 | 8.50E-20 | tandem | |
Sed04g1981 | Sed-Chr4:34382617 | Sed09g1060 | Sed-Chr9:34167373 | 4.50E-20 | wgd | |
Sed07g0481 | Sed-Chr7:3658297 | Sed09g1060 | Sed-Chr9:34167373 | 4.00E-20 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39586 | PF00847 | AP2 | 1.70E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1060 | K14516 | - | csv:101205053 | 243.432 |