Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1075 ATGGAACAGGTTGAAGAAGCTAACAGAGAAGCTGTGGAGAGTTGTCACACAGTGTTGAATCTGTTAACTCAAGATCATCATCATCATCATTATCATCATCAAGAATCGAAGCTTAGGAGTTCATTAATGGCGAAAACTGGCGAAGCTGTGAGTAAGTTCAAGAGGGTTTTGTGTCTTCTTGATTCTTCTTCTCGTTTAGGTCATGCCAGGGTCAGGATTAAAAACAAGGTTAAGAGCTTCTCCTCTTTTCCTCAGCCTCAATCCAGTTTTCTAGAAGCTTTTTCCCCTAATTGCAGAATGGACCTTCTTCAGGGGAGGGATTTGCAGATGGGTCCTCTTTCTTTGGGGAACCCATCTTTGGAATTGAGCTCAAATTTCAAAAGGGTGTTGTTGGGCAGTAAACCTAATCCTAATGCTTCATATAACTTGAATTTTGATAGCTCTAGCTGCATACAGCACACAATGTCTTCCACTAGGTCTTTTGTTTCATCATTGAGCATTGATGGGAGTGTGGCTACCTTGGATGGGAGTGGCTTTCATTTGATCGGGGCGAGCCGGTCCTCGGATCAGAATTCGAACCATAGGAGGAAGTGCAGTGGGAGAGGGGAGGATGGGAGTGTTAAATGTGGAAGCATTGGGAGATGTCATTGCTCAAAGAAGAGGAAACATCGAGTGAGGCGGTCGATCAAGGTACCTGCGATAAGTAACAAGCTTGCTGATATTCCTCCGGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCATCCGAGAGGATACTATAAATGTAGTAGCATGAGAGGTTGTCCAGCGAGGAAGCATGTCGAGAGGTGTGTCGAGGAACCTTCAATGCTCATTGTTACATATGAAGGTGAGCACAACCATCCCAGAATACCTTCTCAAATTGCAAATACTTGA 933 44.05 MEQVEEANREAVESCHTVLNLLTQDHHHHHYHHQESKLRSSLMAKTGEAVSKFKRVLCLLDSSSRLGHARVRIKNKVKSFSSFPQPQSSFLEAFSPNCRMDLLQGRDLQMGPLSLGNPSLELSSNFKRVLLGSKPNPNASYNLNFDSSSCIQHTMSSTRSFVSSLSIDGSVATLDGSGFHLIGASRSSDQNSNHRRKCSGRGEDGSVKCGSIGRCHCSKKRKHRVRRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCVEEPSMLIVTYEGEHNHPRIPSQIANT 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34485054 34487740 + Sed0010703.1 Sed09g1075 725839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1075 310 Gene3D WRKY domain 227 303 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1075 310 SUPERFAMILY WRKY DNA-binding domain 240 302 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1075 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 305 IPR044810 GO:0003700(InterPro)
Sed09g1075 310 MobiDBLite consensus disorder prediction 185 204 - -
Sed09g1075 310 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1075 310 SMART WRKY_cls 242 302 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1075 310 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed09g1075 310 Pfam Plant zinc cluster domain 195 240 IPR018872 -
Sed09g1075 310 FunFam WRKY transcription factor 65 226 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1075 Sed-Chr9:34485054 Sed13g1775 Sed-Chr13:22795985 1.50E-46 dispersed
Sed01g4330 Sed-Chr1:71415634 Sed09g1075 Sed-Chr9:34485054 2.10E-86 transposed
Sed07g0470 Sed-Chr7:3544016 Sed09g1075 Sed-Chr9:34485054 9.10E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39589 PF03106 WRKY 2.90E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1075 - - - 0.0