Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1087 ATGGCGAACAACCATTCCGACACTCCGGCCGACGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGGTCGGCGGAGCAAGGGTTGGGTGGAACCGACGGCGGCTTGGTCGGAGCTGCGGCGGCGGCTCATGGACAGGGTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGCGGCGGCGGGCATATGTCTGCGATTGGGAGTGGGAGTGTCGGTGGAGGAAGGTTTCATGGCGGACCCCCTTTTCCTTTGGGGTTGAGTTTGGACCAAGGGAATAGTGGGTTTCTTAAGGCTGAGGAGGCTTCTGGAAGTGGGAAACGGTATTGTGGTGAGGTTGTTGACGTTCGAGCTTCTTCTGTTAAAAATGTTTATCATGGCCAACAAATGCATGCTACTCCTATGGGTTCGACCCCGCATCCACCAGCAATGCGCCCTAGGGTACGGGCCAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCCTTACAAGAGCTTGTTCCGAGTGTCAACAAGACGGATAGAGCTGCCATGCTCGATGAAATAGTGGACTATGTAAAGTTCCTACGCCTCCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGACGGGAGCGAAGGCGGTAGGAATCAACCTGCGTGGGAGAAGTGGTCGAACGACGGTACAGAGAGACAAGTTGCCAAGCTCATGGAAGAAAACGTGGGAGCTGCAATGCAATTCCTTCAATCAAAAGCACTTTGCATCATGCCCATCTCGTTGGCTTCGGCGATTTACCACACGCAACCGCCTGATAGCTCGAGCGTTGTGAAGCCGGAGAGTGGCCCTCCATCATAG 933 53.8 MANNHSDTPADDFLEQILGISPFGSAEQGLGGTDGGLVGAAAAAHGQGPMMLQLSSGDGGGGHMSAIGSGSVGGGRFHGGPPFPLGLSLDQGNSGFLKAEEASGSGKRYCGEVVDVRASSVKNVYHGQQMHATPMGSTPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEDGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESGPPS 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34703580 34708720 - Sed0015923.1 Sed09g1087 725851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1087 310 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983(InterPro)
Sed09g1087 310 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 289 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed09g1087 310 FunFam Basic helix-loop-helix transcription factor 149 211 - -
Sed09g1087 310 SMART finulus 160 209 IPR011598 GO:0046983(InterPro)
Sed09g1087 310 Gene3D - 149 211 IPR036638 GO:0046983(InterPro)
Sed09g1087 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983(InterPro)
Sed09g1087 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 213 IPR036638 GO:0046983(InterPro)
Sed09g1087 310 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0596 Sed-Chr8:4098574 Sed09g1087 Sed-Chr9:34703580 2.00E-45 dispersed
Sed08g1273 Sed-Chr8:26496972 Sed09g1087 Sed-Chr9:34703580 7.20E-70 dispersed
Sed09g1087 Sed-Chr9:34703580 Sed11g1869 Sed-Chr11:33289510 5.10E-15 dispersed
Sed09g1087 Sed-Chr9:34703580 Sed12g2300 Sed-Chr12:33179441 3.00E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39592 PF00010 HLH 1.20E-07 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1087 - - - 0.0