Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g1087 | ATGGCGAACAACCATTCCGACACTCCGGCCGACGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGGTCGGCGGAGCAAGGGTTGGGTGGAACCGACGGCGGCTTGGTCGGAGCTGCGGCGGCGGCTCATGGACAGGGTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGCGGCGGCGGGCATATGTCTGCGATTGGGAGTGGGAGTGTCGGTGGAGGAAGGTTTCATGGCGGACCCCCTTTTCCTTTGGGGTTGAGTTTGGACCAAGGGAATAGTGGGTTTCTTAAGGCTGAGGAGGCTTCTGGAAGTGGGAAACGGTATTGTGGTGAGGTTGTTGACGTTCGAGCTTCTTCTGTTAAAAATGTTTATCATGGCCAACAAATGCATGCTACTCCTATGGGTTCGACCCCGCATCCACCAGCAATGCGCCCTAGGGTACGGGCCAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCCTTACAAGAGCTTGTTCCGAGTGTCAACAAGACGGATAGAGCTGCCATGCTCGATGAAATAGTGGACTATGTAAAGTTCCTACGCCTCCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGACGGGAGCGAAGGCGGTAGGAATCAACCTGCGTGGGAGAAGTGGTCGAACGACGGTACAGAGAGACAAGTTGCCAAGCTCATGGAAGAAAACGTGGGAGCTGCAATGCAATTCCTTCAATCAAAAGCACTTTGCATCATGCCCATCTCGTTGGCTTCGGCGATTTACCACACGCAACCGCCTGATAGCTCGAGCGTTGTGAAGCCGGAGAGTGGCCCTCCATCATAG | 933 | 53.8 | MANNHSDTPADDFLEQILGISPFGSAEQGLGGTDGGLVGAAAAAHGQGPMMLQLSSGDGGGGHMSAIGSGSVGGGRFHGGPPFPLGLSLDQGNSGFLKAEEASGSGKRYCGEVVDVRASSVKNVYHGQQMHATPMGSTPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEDGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESGPPS | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 34703580 | 34708720 | - | Sed0015923.1 | Sed09g1087 | 725851 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g1087 | 310 | Pfam | Helix-loop-helix DNA-binding domain | 159 | 204 | IPR011598 | GO:0046983(InterPro) | |
Sed09g1087 | 310 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 94 | 289 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Sed09g1087 | 310 | FunFam | Basic helix-loop-helix transcription factor | 149 | 211 | - | - | |
Sed09g1087 | 310 | SMART | finulus | 160 | 209 | IPR011598 | GO:0046983(InterPro) | |
Sed09g1087 | 310 | Gene3D | - | 149 | 211 | IPR036638 | GO:0046983(InterPro) | |
Sed09g1087 | 310 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 203 | IPR011598 | GO:0046983(InterPro) | |
Sed09g1087 | 310 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 152 | 213 | IPR036638 | GO:0046983(InterPro) | |
Sed09g1087 | 310 | MobiDBLite | consensus disorder prediction | 233 | 253 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0596 | Sed-Chr8:4098574 | Sed09g1087 | Sed-Chr9:34703580 | 2.00E-45 | dispersed | |
Sed08g1273 | Sed-Chr8:26496972 | Sed09g1087 | Sed-Chr9:34703580 | 7.20E-70 | dispersed | |
Sed09g1087 | Sed-Chr9:34703580 | Sed11g1869 | Sed-Chr11:33289510 | 5.10E-15 | dispersed | |
Sed09g1087 | Sed-Chr9:34703580 | Sed12g2300 | Sed-Chr12:33179441 | 3.00E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39592 | PF00010 | HLH | 1.20E-07 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g1087 | - | - | - | 0.0 |