Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g1096 ATGTTTTCTCCAACTATGTCCAATTCAACTTCTTTGTCTGAAGAAGCCACAAGACTCCAGCCTGATTTCAGCTGTTTAAACCCTCTCCTACCAACGTTTACTCCACAACAAAAGGTCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGACCCAGATGCGGAAGTGATAGCGCTTTCGCCGAAAACGCTTCTAACCGCAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAACTTGCAGCTGCATAGGAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAAACAACAAAGAAGTGAAGAAAAAAGCCTATGTTTGTCCAGTGCCAACTTGTGTTCATCATCATCCATCAAGAGCTTTGGGAGATCTCACTGGAATTAAAAAACATTATTGTAGAAAACATGGAGAAAAGAAATGGAAGTGTGATAAATGTTCAAAAGTCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGAGCCCTTTTCTCAAGGAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCACTTGGCCATGGCAGCGGCCGCCGCCTCGGGTTCGAATATCACCGGCATAAACCCGTCCTCGGCCACTGCCAACCAATCTCTCTTCTCTTTTGGTAGTCTGCACCAATTCTCGAACTCGTTACTATCACCGCCTCCACCATCGTCGCAAACCCATATATCCCTATACCCTTGGGACCATCCCCAAAACCCTAACCCTAATCATACCCTCCAAATCATAAAGCCAGAAGACTCACATTTTCATTCTCACAATTTTCACCAAATTCCAACTTTGCCCCTCTCCAATTCCACCTCCAACAACCCTTTTGGTGTAATTCAAGACCACAACCCCCATCACAAGGCTTCATCCTCCTCTTCTATGATAACATCACCATTCAGGAACCTCCACGTGTCGGTGCAGCCGGCGTCAAATGCTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTCCAAAAGGCTGCAACAGTTGGAGTTGGGGCTGCAAAATCCACCCACCAGCAGCCCGAGTCAGTAGGACACATCACTCACTTCAACATGCCCAATATTGCCGAGTTCGGCTCACCAACTCACATCGACTCGCTGACTCAACTCGGTCCAAACTATGCCATGTGGAAAAAGAGTGACCAGCTGACTAGGGATTTCCTCGGTCTCACCGGGGATGGGCAAGGCGGCAGGGGTGGCTCCGATATCGGTGGCAGTAGAGGTGTTCAGGTTAGCATGAGCGTTAAGGATATGCTAGCGTATGCTGGAGGATCGAAGATGTTTAGGCCACATAACAATAATAATAGTGTCTTTGGTTATGCAAATGAAACTTGGGACTTTGAGTGA 1446 46.96 MFSPTMSNSTSLSEEATRLQPDFSCLNPLLPTFTPQQKVKKKRSLPGNPDPDAEVIALSPKTLLTANRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPVPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGALFSRKDSFITHRAFCDALAEESARLSANHLAMAAAAASGSNITGINPSSATANQSLFSFGSLHQFSNSLLSPPPPSSQTHISLYPWDHPQNPNPNHTLQIIKPEDSHFHSHNFHQIPTLPLSNSTSNNPFGVIQDHNPHHKASSSSSMITSPFRNLHVSVQPASNAATSAHLSATALLQKAATVGVGAAKSTHQQPESVGHITHFNMPNIAEFGSPTHIDSLTQLGPNYAMWKKSDQLTRDFLGLTGDGQGGRGGSDIGGSRGVQVSMSVKDMLAYAGGSKMFRPHNNNNSVFGYANETWDFE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34860892 34864657 - Sed0017240.1 Sed09g1096 725860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g1096 481 Gene3D Classic Zinc Finger 68 92 - -
Sed09g1096 481 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Sed09g1096 481 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 171 208 - -
Sed09g1096 481 SMART c2h2final6 110 140 IPR013087 -
Sed09g1096 481 SMART c2h2final6 69 91 IPR013087 -
Sed09g1096 481 SMART c2h2final6 145 165 IPR013087 -
Sed09g1096 481 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 144 168 - -
Sed09g1096 481 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Sed09g1096 481 Gene3D Classic Zinc Finger 102 193 - -
Sed09g1096 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 428 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed09g1096 481 FunFam protein indeterminate-domain 12-like 48 116 - -
Sed09g1096 481 Pfam Zinc finger, C2H2 type 69 91 IPR013087 -
Sed09g1096 481 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Sed09g1096 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Sed09g1096 481 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 106 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2222 Sed-Chr6:45918264 Sed09g1096 Sed-Chr9:34860892 5.50E-88 dispersed
Sed09g1096 Sed-Chr9:34860892 Sed13g1864 Sed-Chr13:23640561 6.20E-84 dispersed
Sed07g0446 Sed-Chr7:3325701 Sed09g1096 Sed-Chr9:34860892 4.70E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39594 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g1096 K25870 - csv:101208253 692.189